Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3687 ATGGGGAGAGTTAAGCTTCAGATCAAAAAGATTGAGAACATAACAAATAGACAGGTTACTTTCTCAAAGAGAAGGAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTATGCGATGTTGATGTCGGTCTCATCATGTTTTCTCCATCTGGGAGAGCCACTCTCTTCTCTGGCAATAGAAGCATTGAAGAAATCCTAGAACGATATATAAATCTTCCAGACAGTGAACGTGGAAGGATGCATAATCAAGAGCACATCCGAAAGGTGCTTAGAAAGTTGAAAGCTGAAACTGATCAGATATGCCAAGCTCCTAGCCCTACAATTACAGACTTCCAACTAAAGGAGGTTCAAAGAGAAATATTTATTTGCAAGTCTCAATTGGAAGAGATGGAGAATCGACTAAGGATATTTGAAGGAGATCCTTCAGAGATTACCACATTGTGTGAGGCGGAATATCGTGAACAAGTCCTGCAGGAAACTCTAAAACAAGTGCAACTGCGAAAAGTACATCTTACAAAAACTGTAGATGTAGATGGATTTATTGCTGGAACTACAGAGAATGCATTAGGCTGGTTTTCTCAGGGAGATACCAATGATCAGATTCTAAACTTTGCCAATGCTTACAACCCTTCTCCTCTCAGTGATCACCAATCACTGAGTACTGTTGTCGATATGGTAACGCCAACTTCGACCCTTCTGAACTCTGCAAACGTCGATCACAATTGTCAAATTAGTCCCAGGGATGCTGCAGAGGCTGACATTAGTAATACACTAAGTACTCAGTTTGGACAAGTTATGGACACCAGTTTGTCCTCTTGGGAGCACCTCCATCAATTAGAGAGAGGACCACTGGCAGTTGCAGAGACAAGAGAAGGGCATCTGTTTGAGCAGTATTTTTCTCAATTTAGTCCGTCAAATATCTTAATAACTAATCATGGTCAACTTCAAACATGA 957 0.4044 MGRVKLQIKKIENITNRQVTFSKRRNGLIKKAYELSVLCDVDVGLIMFSPSGRATLFSGNRSIEEILERYINLPDSERGRMHNQEHIRKVLRKLKAETDQICQAPSPTITDFQLKEVQREIFICKSQLEEMENRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQLRKVHLTKTVDVDGFIAGTTENALGWFSQGDTNDQILNFANAYNPSPLSDHQSLSTVVDMVTPTSTLLNSANVDHNCQISPRDAAEADISNTLSTQFGQVMDTSLSSWEHLHQLERGPLAVAETREGHLFEQYFSQFSPSNILITNHGQLQT* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3687 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Mtr3g3687 318 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr3g3687 318 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr3g3687 318 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr3g3687 318 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Mtr3g3687 318 Coils Coil 114 134 - -
Mtr3g3687 318 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Mtr3g3687 318 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr3g3687 318 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mtr3g3687 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 176 289 - -
Mtr3g3687 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
Mtr3g3687 318 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr3g3687 318 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 176 289 - -
Mtr3g3687 318 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3687 Mtr-Chr3 50723845 50726388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3687 1 210 Type I MADS-box Gene Family AT1G77980 41.453 3.71e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g3687 SRF-TF 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3687 - - mtr:MTR_3g102570 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3687 3 50723845 50726388 Mtr3g3687 3 50723845 50726388 ECH