Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3661 ATGGTACAGCAAAGCGAATCAACTAGGAGGATCATGGAAGAAGAAAGAGATTGTTGTTCAACAATAATAAGAAACATAGAAAGCAACAACAAACCTCAAGAGAAACACAACAAACAACAACTAGAGAAACCATACAGAGGAATAAGGAAGAGAAAGTGGGGTAAGTGGGTAGCAGAAATAAGAGAACCAAATAAAAGATCAAGAATATGGTTAGGTTCTTACATCACTCCGGTAGCTGCTGCTCGTGCCTACGACACCGCCGTATTCTATTTAAGAGGTCCTACGGCTCGTCTTAATTTCCCCGAATTATTGCTCGAAGACGACGAAGAAAACAAGGACGGTTCTATTCAGCAAGGTAACATGTCTGCTGATTTAATACGCAAAAAAGCTACCAAAGTCGGTGCTAGAGTTGATGCTCTTCAAGCGGCTCTTCAAGCTTCTTCTCGTTCTGATTCCGATCAATTCAACGCTGATGTGAAACCTGATTTGAACAAGTTTCCAGAACCTGAAGATTATTAA 519 0.4066 MVQQSESTRRIMEEERDCCSTIIRNIESNNKPQEKHNKQQLEKPYRGIRKRKWGKWVAEIREPNKRSRIWLGSYITPVAAARAYDTAVFYLRGPTARLNFPELLLEDDEENKDGSIQQGNMSADLIRKKATKVGARVDALQAALQASSRSDSDQFNADVKPDLNKFPEPEDY* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3661 172 Pfam AP2 domain 45 93 IPR001471 GO:0003700|GO:0006355
Mtr3g3661 172 MobiDBLite consensus disorder prediction 146 172 - -
Mtr3g3661 172 MobiDBLite consensus disorder prediction 155 172 - -
Mtr3g3661 172 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Mtr3g3661 172 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Mtr3g3661 172 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Mtr3g3661 172 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Mtr3g3661 172 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Mtr3g3661 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 19 171 - -
Mtr3g3661 172 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Mtr3g3661 172 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Mtr3g3661 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 19 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3661 Mtr-Chr3 50490423 50491279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3661 32 158 AP2-EREBP Transcription Factor Family AT1G46768 64.062 5.29e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g3661 AP2 3.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3661 K09286 - gmx:100801528 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3661 3 50490423 50491279 Mtr3g3661 3 50490423 50491279 ECH