Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3660 ATGGCGCAAAATCACGAGAATGTGAACAATGACGTGGCGGCGGCTCCGGTTCCGAATCAGCTGACAACGACATCGTTGTACGTCGGAGATCTCGATCACGACGTCACCGATTCACAGCTTTACGATCTTTTCAACCAGATCGGTCAAGTTGTTTCTGTTCGGATCTGTAGGGATTTGGCTTCTCAACAATCCCTAGGTTACGGTTATGTCAATTTCAGTAACCCTCATGACGCTGCAAAGGCGATGGATGTGCTAAATTTCACTCCGCTGAACAACAAACCGATTCGGATTATGTATTCTCATCGCGACCCTAGTGTTCGGAAGAGTGGTGCTGCTAATATTTTCATCAAGAACCTGGACAGGGCAATTGATCATAAAGCTTTATATGATACCTTTTCGATTTTTGGAAATATCCTTTCTTGCAAGATAGCAATGGATGCTTCTGGTCTGTCTAAAGGCTACGGTTTTGTGCAATTTGAGAATGAAGAATCTGCACAAAGTGCAATTGACAAGTTAAATGGCATGCTGCTCAACGATAAACCGGTCTACGTTGGTCATTTCCAGAGGAAGCAGGATAGAGATAACGCTTTGAGTAATGCGAAGTTTAACAATGTCTATGTGAAAAACCTATCAGAATCGGTTACAGATGATGACTTGAAGAACACTTTTGGAGAATATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCAAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTGAAGCCGTGGAGGCACTCAATGGAAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCTAAAAAAATATGAAAGGGAGCTTGAGCTGAAAGAAAGACACGAGCAGAGTATGAAGGAAACTGTTGACAAGTTTTATGGTGCAAACTTGTATCTCAAGAACTTGGATGATAGCGTCACTGATGAAAAACTTAGCGAACTCTTCTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCCACAGGGAATTAGTAGGGGATCTGGATTTGTTGCCTTTTCAACCCCCGAGGAAGCAACTCGAGCTCTTGCTGAGATGAATGGCAAAATGGTTGCGGGCAAACCTCTCTATGTTGCTCCTGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGCACAATTTTCGCAAGTGAGGCCGGTTACAATGGCTCCTATTGCACCTCGATTGCCATTTTACCCTGCGGGTGTTCCTGGGATGGGACAACAAATTATGTATGGCCAAGCTCCTCCAGCCTTCATATCTCAGGCTGGATTTGGTTACCCGCAGCAACTGGTTCCTGGAATGAGACCAGGTGGTGCTCCAATGCCAAACTTCTTCATGCCCATGGTTCAGCAGGGTCAACAAGGTCAGCGTCCAGGCGGACGGCGGGGAGCAAGTCCTATGCAACAACTCCCGCATTCATTGCCAATGATGCAGCAGCAGATGCATCCAAGAGGACGTGTCTATCGATATCCTACTGGTCGCAACCCACAAGGTATTCCCATGCCAGGAGTAGCTGGAGGAACGCCCATGCAGGCTCTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGGACTATGCTTGGTGAAGTTTTATACCCTCTAGTAGAGAAGATTGAGCATGCTGGAGCTGCAAAGGTTACTGGTATGCTTTTGGAGATGGACCAGCCTGAGGTGTTACATCTGATTGAGTCACCAGAGGCTCTCAAGACTAAAGTTGCTGAGGCCGTGGATGTGTTGAGAAATGTTGCACAGCAGCAATCGAACAGCCCAACTGATCAACTTGCTTCTCTCTCTCTTAACGACAATCTTGAGTCTTAG 1869 0.4559 MAQNHENVNNDVAAAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVTMAPIAPRLPFYPAGVPGMGQQIMYGQAPPAFISQAGFGYPQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRGASPMQQLPHSLPMMQQQMHPRGRVYRYPTGRNPQGIPMPGVAGGTPMQALATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAVDVLRNVAQQQSNSPTDQLASLSLNDNLES* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3660 622 Gene3D - 521 603 - -
Mtr3g3660 622 SMART rrm2_1 25 98 IPR003954 GO:0003676
Mtr3g3660 622 SMART rrm2_1 113 185 IPR003954 GO:0003676
Mtr3g3660 622 SMART rrm2_1 307 379 IPR003954 GO:0003676
Mtr3g3660 622 SMART rrm2_1 204 276 IPR003954 GO:0003676
Mtr3g3660 622 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 524 601 IPR002004 GO:0003723
Mtr3g3660 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Mtr3g3660 622 Coils Coil 279 299 - -
Mtr3g3660 622 SUPERFAMILY PABC (PABP) domain 490 615 IPR036053 GO:0003723
Mtr3g3660 622 CDD RRM2_I_PABPs 110 186 IPR045305 -
Mtr3g3660 622 Pfam Poly-adenylate binding protein, unique domain 532 596 IPR002004 GO:0003723
Mtr3g3660 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Mtr3g3660 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Mtr3g3660 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Mtr3g3660 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Mtr3g3660 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Mtr3g3660 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Mtr3g3660 622 SMART rrm1_1 25 98 IPR000504 GO:0003723
Mtr3g3660 622 SMART rrm1_1 307 379 IPR000504 GO:0003723
Mtr3g3660 622 SMART rrm1_1 204 276 IPR000504 GO:0003723
Mtr3g3660 622 SMART rrm1_1 113 185 IPR000504 GO:0003723
Mtr3g3660 622 CDD RRM1_I_PABPs 25 104 - -
Mtr3g3660 622 Gene3D - 2 105 IPR012677 -
Mtr3g3660 622 SUPERFAMILY RNA-binding domain, RBD 24 193 IPR035979 GO:0003676
Mtr3g3660 622 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 597 IPR006515 GO:0003723
Mtr3g3660 622 PANTHER POLYADENYLATE-BINDING PROTEIN 14 606 - -
Mtr3g3660 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Mtr3g3660 622 SUPERFAMILY RNA-binding domain, RBD 199 286 IPR035979 GO:0003676
Mtr3g3660 622 PANTHER RNA BINDING PROTEIN 14 606 - -
Mtr3g3660 622 CDD RRM4_I_PABPs 305 383 - -
Mtr3g3660 622 SUPERFAMILY RNA-binding domain, RBD 298 393 IPR035979 GO:0003676
Mtr3g3660 622 Gene3D - 106 192 IPR012677 -
Mtr3g3660 622 Gene3D - 193 287 IPR012677 -
Mtr3g3660 622 Gene3D - 288 395 IPR012677 -
Mtr3g3660 622 SMART poly_2 536 599 IPR002004 GO:0003723
Mtr3g3660 622 MobiDBLite consensus disorder prediction 600 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3660 Mtr-Chr3 50455870 50464548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3660 19 617 Eukaryotic Initiation Factors Gene Family AT4G34110 68.046 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3660 K13126 - csin:114281995 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3660 3 50455870 50464548 Mtr4g2768 4 41376510 41381809 ECH
Mtr3g3660 3 50455870 50464548 Mtr3g3660 3 50455870 50464548 ECH