Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3652 ATGGCTCTTCTACTAGACAACTGTGAAGGCATTTTACTCTCATTAGACTCACACAAATCAGTCCCAGCTCCATTCCTCACCAAAACATACCAACTTGTTGATGATCCAGCCACAGATCACATCGTTTCTTGGGGTGAAGATGACTCCACCTTCGTTGTTTGGCGTCCTCCTGAATTTGCTAGAGACCTCCTCCCTAACTACTTCAAACACAACAACTTCTCTAGCTTCGTTCGACAACTCAACACCTATGGTTTTAGAAAGATTGTACCTGACAGATGGGAGTTTGCAAATGAATATTTCAAAAAAGGAGAAAAGCATTTGCTTTGTGAGATTCATAGAAGAAAAACATCACAGCCACAACAAACAGGAATCAACATGAATCATCACCAGCAGCATCACAATGTTCCACCAAGTTTCTTTCCATTTTCAAACACTAGAGTTAGCATTTCTCCATCCAATGATTACTCTGATGAACAACTCAACAACTGGTGCGACTCTCCACCATTAACTTCACCATCATTTGTTAATGGAGGAACACAAACAACAGCAACAAACAACTACAATACTTCTGTTACTGCTCTTTCTGAAGACAATGAAAGACTAAGAAGAAGTAACAACATGTTAATGTCTGAGTTAGCTCACATGAAGAAGCTTTACAATGATATTATCTACTTTGTTCAGAATCATGTTAAACCAGTAGCTCCAAGTAACTCTTACTCTTCATCTTTTCTGCTTCCACAAGCTTCAAATTCAACTCCTATGAATGGTGGTGGTAATGTTTCAATGGTGCAAAAGCCAATGAACCAGCTTTTGGGCTATTACAATTCTAACCCTAAACATGTTTCTCATCTTCAAACTCAAAATCAAACACATCATGGTATGAATGTGAACTCTCCTACAAACACATCAAGAAGCTCAATAACAATGGTTGAAGGGCTTAACAGTAATAACTGCAGCAAGACTAAGCTTTTTGGAGTATCACTTCAGTCCAAGAAAAGAGTGCACCCTGAATGTGGATCTAATAATCCAAATAGTTTGGAAACAAACAAGGCTCGTTTGGTTTTGGAAAAAGAACATGATTTTGATTTGGGTTTGAATCTCATGCCTCCTTCCACTTGTTAG 1122 0.385 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEYFKKGEKHLLCEIHRRKTSQPQQTGINMNHHQQHHNVPPSFFPFSNTRVSISPSNDYSDEQLNNWCDSPPLTSPSFVNGGTQTTATNNYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSFLLPQASNSTPMNGGGNVSMVQKPMNQLLGYYNSNPKHVSHLQTQNQTHHGMNVNSPTNTSRSSITMVEGLNSNNCSKTKLFGVSLQSKKRVHPECGSNNPNSLETNKARLVLEKEHDFDLGLNLMPPSTC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3652 373 PANTHER BNAC06G00310D PROTEIN 297 372 - -
Mtr3g3652 373 PANTHER BNAC06G00310D PROTEIN 12 240 - -
Mtr3g3652 373 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3652 373 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3652 373 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3652 373 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 240 IPR027725 -
Mtr3g3652 373 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 297 372 IPR027725 -
Mtr3g3652 373 Coils Coil 191 211 - -
Mtr3g3652 373 Gene3D - 17 116 IPR036388 -
Mtr3g3652 373 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3652 373 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Mtr3g3652 373 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr3g3652 373 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3652 Mtr-Chr3 50378198 50379986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3652 1 372 HSF AT1G46264 55.443 1.24e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr3g3652 HSF_DNA-bind 1.9e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3652 3 50378198 50379986 Mtr3g3652 3 50378198 50379986 ECH