Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3651 ATGGACTGTAACCAGTTAAAGTCATCTTCATCATCATCAGAGGAACAAATTGACATGATGTTAATGATGATGATGCAACTCCCTGAATTTTCTTCATCTAACGGTAATAACAACACCATCAATCAATTTCCACCGTCAGATCAACAATTCTATGGCACTTCAAATGCTTCTAACAATACACGTCCTCTTGCAGATTTAATAGATAACCCTCCTAATCAAATACCATGGTCTTCATCTTCATCATTCACTCACTTACCTTCACAATCCACCACAAATACAAACACAATCTATTTCACCAATAACAACTCTACACCATTAATGTTCCAACAACAACAAACAACACCGTTAATGTTTTCGAATTCGAGCAACGAGATTGCTCCGAATACGAACCATTATGGTACTGCATCGCCATCAGAGAAACGAAACTCGATGGCGGCGATGAGGGAGATGATATTCAGAATAGCAGCTATGCAACCAATTTACATAGACCCTGAATCCGTAAAACCACCAAAGAGAAGAAACGTGAAGATTTCAAAAGATCCTCAGAGTATAGCAGCTAGACACAGAAGAGAAAGAATAAGCGAGAAAATAAGAATACTGCAAAGAATGGTACCAGGTGGAACTAAAATGGATACTGCATCAATGTTGGATGAAGCTATTCATTATGTTAAGTTTCTCAAGACACAACTTAAGTCACTGCAGGAACGTGCTTCAGGAGCCAACAGTAACAGGACAGTTGCTGGTTCAGGATTAGGGTTCCCTGTTTCATTGCCTAAGCCTAATTACCAAGATCGTAATGTTGATCGTTATGGGTGA 816 0.3909 MDCNQLKSSSSSSEEQIDMMLMMMMQLPEFSSSNGNNNTINQFPPSDQQFYGTSNASNNTRPLADLIDNPPNQIPWSSSSSFTHLPSQSTTNTNTIYFTNNNSTPLMFQQQQTTPLMFSNSSNEIAPNTNHYGTASPSEKRNSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKSLQERASGANSNRTVAGSGLGFPVSLPKPNYQDRNVDRYG* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3651 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Mtr3g3651 271 Gene3D - 176 246 IPR036638 GO:0046983
Mtr3g3651 271 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 246 IPR045843 GO:0003700|GO:0006355
Mtr3g3651 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 237 IPR036638 GO:0046983
Mtr3g3651 271 MobiDBLite consensus disorder prediction 32 60 - -
Mtr3g3651 271 Pfam Helix-loop-helix DNA-binding domain 184 226 IPR011598 GO:0046983
Mtr3g3651 271 CDD bHLH_AtIND_like 178 236 - -
Mtr3g3651 271 SMART finulus 183 232 IPR011598 GO:0046983
Mtr3g3651 271 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 246 - -
Mtr3g3651 271 Coils Coil 216 243 - -
Mtr3g3651 271 MobiDBLite consensus disorder prediction 241 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3651 Mtr-Chr3 50351249 50352557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3651 95 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 59.172 1.86e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g3651 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3651 - - gmx:100815041 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3651 3 50351249 50352557 Mtr3g3651 3 50351249 50352557 ECH