Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3643 ATGGTTGCACTTGCAGCAATAGCAAGAAGCTTCCATTTCCAGCAACATTCTTTAATCAACAGCAATGTCATTGGTAAACCTTCAACAGCAGGACACCACTGGCTCAGGCCTGCTGCTGCAGGAACAGGAGTCACTCCACGTTGTAAACAAATTTGTGCAGCAGCACAACAGCGACCCACATGGCTCCCGGGACTTGATCCCCCAACTTATCTTGATGGAACCCTGCCTGGAGATTTTGGGTTCGACCCACTTGGACTAGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTGCAAGCAGAGTTGGTTCATTCTCGCTTTGCAATGCTTGGGGTCTTGGGAATTTTAGTCACAGATCTACTTCGTGTCGCAGGAGTTAATAGCATACCAATTTGGTTTGAAGCTGGTGCAGTAAAATACGAGTTTGCCAACACAGGGACGCTCGTTGTTGTTCAACTACTCTTGATGGGGTATGCTGAAACAAGAAGGTATATGGATTTTGTCAGTCCTGGATCTCAAGCTAAAGAGGGTTCCTTCTTTGGATTGGAAGCTTCACTTGGAGGCTTAGAGCCAGGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCTTAGCTAAAGACATTAAAAGTGCTCGCGAATGGAAGCTTAAAGAGATCAAGAATGGGCGACTTGCAATGGTAGCAATACTTGGTATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCAATTGATAACCTTGTTGAGCATCTCTCCAATCCATGGCATAAAACTATTATTCAGATCCTTGCAAGTTCTAGTTCTTAA 804 0.454 MVALAAIARSFHFQQHSLINSNVIGKPSTAGHHWLRPAAAGTGVTPRCKQICAAAQQRPTWLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNSIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETRRYMDFVSPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQILASSSS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3643 267 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 14 264 - -
Mtr3g3643 267 SUPERFAMILY Chlorophyll a-b binding protein 54 264 - -
Mtr3g3643 267 Pfam Chlorophyll A-B binding protein 67 235 IPR022796 -
Mtr3g3643 267 Gene3D Chlorophyll a/b binding protein domain 60 267 - -
Mtr3g3643 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 14 264 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3643 Mtr-Chr3 50261887 50263739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3643 50 259 Chloroplast and Mitochondria Gene Families AT3G61470 49.289 8.40e-65 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3643 K08911 - gmx:100804934 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3643 3 50261887 50263739 Mtr3g3643 3 50261887 50263739 ECH