Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3620 ATGGATTTGAATATGAATTTTGAAGCTATTAATAGAAGCTCTTCAACAACAACATCATCATCAGACTCATGTTCCTCAGAAACAAACCAAAACAAACTAGACAGAATCAAAGGTCCATGGAGTGCAGAAGAAGACAGAATTTTAACACGACTGGTTGAACAACATGGAGCAAGAAACTGGTCACTCATCAGCCGCTACATAAAAGGTCGTTCCGGCAAGTCATGTCGTCTCCGGTGGTGTAATCAGCTGAGTCCCACCGTGGAACACCGTCCATTTTCTTCACAAGAAGATGAAACAATCATAGCGGCGCATGCTCAATATGGTAACCGTTGGGCTACCATTGCAAGGCTTTTACCTGGTAGAACTGATAATGCTGTCAAGAATCATTGGAACTCTACGCTTAAGCGTAGAGCGGGTTGTGGTGGTTCTGTTACGGTTGCTGGAGGTGGCAACGAAGGTGGTCAGTTTACTTTTCCGTTGGAAGATGATCCGTTGACCGCGTTGACTCTTGCTCCTCCGGGGAATGGTGTGGAAGATAGGGAGGAAATGGTTGGTGATCATCGGTTTCCTTCGCCGGAAAATGTTCCGACTGAGTTTTGGGATGTGATGAGAGGTGTTATTGCAAGAGAAGTTAGGGAATATGTTTCTTCTAATTTTTCTCATAACTCTAGTTTTCATTGA 681 0.4405 MDLNMNFEAINRSSSTTTSSSDSCSSETNQNKLDRIKGPWSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSSQEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAGCGGSVTVAGGGNEGGQFTFPLEDDPLTALTLAPPGNGVEDREEMVGDHRFPSPENVPTEFWDVMRGVIAREVREYVSSNFSHNSSFH* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3620 226 CDD SANT 39 81 IPR001005 -
Mtr3g3620 226 Gene3D - 36 88 - -
Mtr3g3620 226 MobiDBLite consensus disorder prediction 1 37 - -
Mtr3g3620 226 Pfam Myb-like DNA-binding domain 40 98 - -
Mtr3g3620 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 87 IPR017930 -
Mtr3g3620 226 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Mtr3g3620 226 MobiDBLite consensus disorder prediction 7 35 - -
Mtr3g3620 226 CDD SANT 91 134 IPR001005 -
Mtr3g3620 226 SUPERFAMILY Homeodomain-like 34 130 IPR009057 -
Mtr3g3620 226 SMART sant 36 85 IPR001005 -
Mtr3g3620 226 SMART sant 88 136 IPR001005 -
Mtr3g3620 226 PANTHER MYB PROTEIN-RELATED 1 212 - -
Mtr3g3620 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 138 IPR017930 -
Mtr3g3620 226 PANTHER MYB TRANSCRIPTION FACTOR 1 212 - -
Mtr3g3620 226 Gene3D - 91 137 - -
Mtr3g3620 226 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3620 Mtr-Chr3 50051520 50052789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3620 34 146 MYB Transcription Factor Family AT3G50060 75.221 1.48e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g3620 Myb_DNA-bind_6 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3620 - - vra:106761536 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3620 3 50051520 50052789 Mtr3g3620 3 50051520 50052789 ECH