Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3589 ATGGAATTTGATGAACACGAAGACCTAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAATGGGGTTCCCTGTTACGCCGGTGGCATGTTACGACTCACTTGGAAACTCGGGAGTTAGGTCCAAAAATGGCGGTGGAATCGGTTCAGCGGACGGAGGAGCAGCGACCGCCACAGGCGGTGGTGTCAAAAGTGGGCTAGCAGGAACGGTCAGATACAAAGAATGTCAAAAGAATCACGCCGTCAGCATAGGCGGTCATGCCGTGGATGGATGTTGCGAGTTTTTAGCTGCCGGAGAGGAAGGAACACTGGAAGCGGTGATTTGTGCTGCTTGTGGCTGTCACCGGAACTTCCACCGCAAAGAAATCGACGGTGAATTCACTACCCAGCGGTCTCATCACCCTCAACACCACCACCATCAATTATCACCTTACTACCACCGTGCAGCTTTACCTCCTCCGCCTGGTTTTCACCACCACTCCGTAACTCCACCTATATCACAACATCGTCCATTAGCTTTGCCACCTGCTGCATCGAGTAGGGGATACAGTAGAGAAGAAGATAACGTGTCAAATCCAAGCAGCAGTGGTGGTGGTGGTAGTGGAACGAAGAAAAGGTTTAGAACAAAATTCACGCAGGAACAAAAGGATAAGATGCTTGCATTTGCGGAGAAAATTGGGTGGAGAATTCAGAAGGAAGATGAAGGTGCAATTGAACAATTCTGTGCTGAGAATTTTATCAAGAGACATGTGCTTAAGGTTTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 825 0.4848 MEFDEHEDLEEEEEEEEEEEEEEEEEEQMGFPVTPVACYDSLGNSGVRSKNGGGIGSADGGAATATGGGVKSGLAGTVRYKECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACGCHRNFHRKEIDGEFTTQRSHHPQHHHHQLSPYYHRAALPPPPGFHHHSVTPPISQHRPLALPPAASSRGYSREEDNVSNPSSSGGGGSGTKKRFRTKFTQEQKDKMLAFAEKIGWRIQKEDEGAIEQFCAENFIKRHVLKVWMHNNKHTLGKKP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3589 274 Coils Coil 2 30 - -
Mtr3g3589 274 MobiDBLite consensus disorder prediction 1 37 - -
Mtr3g3589 274 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 211 267 IPR006455 -
Mtr3g3589 274 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 129 IPR006456 -
Mtr3g3589 274 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Mtr3g3589 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 73 273 - -
Mtr3g3589 274 Gene3D - 196 271 - -
Mtr3g3589 274 MobiDBLite consensus disorder prediction 135 213 - -
Mtr3g3589 274 SUPERFAMILY Homeodomain-like 197 272 IPR009057 -
Mtr3g3589 274 MobiDBLite consensus disorder prediction 191 209 - -
Mtr3g3589 274 Pfam ZF-HD protein dimerisation region 78 130 IPR006456 -
Mtr3g3589 274 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 73 273 - -
Mtr3g3589 274 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3589 Mtr-Chr3 49753293 49754742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3589 78 270 ZF-HD Transcription Factor Family AT4G24660 54.639 2.07e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr3g3589 ZF-HD_dimer 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3589 - - gmx:100820567 344.739