Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3579 ATGAAAGGAGAATACGTAGAGCAACATTCTTCAAATCCCAACAAAGGAAATGAAACACCACCACCTTCTTTACTATTCTCAAAGCCATTTCACCCTTTTCAACTTTCTCATCATGAATGTCAACCAATCGGTGAAGATGATAACAACAACACCAGCGGCGGCGTTGCTACCACTCAGAAACCTAACACCTCCGGCGACGGTGCAACTATCGAGGTTTCTAGACGGCCGAGAGGACGTCCACCTGGCTCAAAAAACAAACCAAAACCACCTATTATCATCACAAGGGATCCAGAAACTGTGATGAGTCCTTTTATTCTAGATATTTCTGGTGGAAATGATGTTGTTGAAGCTATTTCAGAGTTTAGTCGTCGTAAGAATATTGGTTTATGTGTTTTAACTGGTTCAGGAACTGTTGCTAATGTTACTCTTCGTCAACCTTCAACTACACCAGGAACCACCGTTACTTTTCACGGCCGTTTTGATATTCTTTCTATAACTGCCACTTTTGTTCCTCAACAACACGGTGTTTCTCCGGCGATTCCGAGTAACTTCTCGATCTCTCTTGCTGGACCTCAAGGACAGATTGTTGGAGGAATTGTTGCTGGAAATTTGATAGCTGCAGGGACGGTGTTTGTGATTGCTTCTTCGTTTAATAATCCGTCGTATCATAGGTTGCCGTTGGAAGAAGATGAAGGTGGAAACTCGGTGTCTGGTGGTGGTGAAGGAAACTCGCAGAATGTTTCCGGTGCGGTGGACAGTGGACAAGGTCAGGGTGGTGGTGGTGAGTCGTGTGGGATGTCGATGTACAACTGTCATTTGCCGTCGTCGGATGTGATTTGGGCTCCGTCTGCTAGACCACCACCACCTTACTGA 873 0.4536 MKGEYVEQHSSNPNKGNETPPPSLLFSKPFHPFQLSHHECQPIGEDDNNNTSGGVATTQKPNTSGDGATIEVSRRPRGRPPGSKNKPKPPIIITRDPETVMSPFILDISGGNDVVEAISEFSRRKNIGLCVLTGSGTVANVTLRQPSTTPGTTVTFHGRFDILSITATFVPQQHGVSPAIPSNFSISLAGPQGQIVGGIVAGNLIAAGTVFVIASSFNNPSYHRLPLEEDEGGNSVSGGGEGNSQNVSGAVDSGQGQGGGGESCGMSMYNCHLPSSDVIWAPSARPPPPY* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3579 290 MobiDBLite consensus disorder prediction 237 253 - -
Mtr3g3579 290 MobiDBLite consensus disorder prediction 45 69 - -
Mtr3g3579 290 MobiDBLite consensus disorder prediction 1 94 - -
Mtr3g3579 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 219 IPR005175 -
Mtr3g3579 290 Gene3D - 102 234 - -
Mtr3g3579 290 MobiDBLite consensus disorder prediction 7 21 - -
Mtr3g3579 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 289 IPR014476 GO:0003680
Mtr3g3579 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 230 - -
Mtr3g3579 290 MobiDBLite consensus disorder prediction 224 261 - -
Mtr3g3579 290 CDD DUF296 103 215 IPR005175 -
Mtr3g3579 290 ProSiteProfiles PPC domain profile profile. 98 239 IPR005175 -
Mtr3g3579 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 26 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3579 Mtr-Chr3 49653333 49654723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3579 66 290 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 64.192 2.98e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3579 - - gmx:100815772 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3579 3 49653333 49654723 Mtr3g3579 3 49653333 49654723 ECH