Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3576 ATGCTGACACACAACCACCGCCATCACATGGCTTCTTCACCTTCTTCATTCTTCAACATTTTCACTCTATTCTTATTACTATTGCAACACTCCCCAATCGTTGTAGTTGCATTTACAGAAACTAGTCCACCCCCAACTCCCATTCCCGAAGACGCAACCACCATTGCTCAATCTCAACCTCAACACACTGTTACACCATTCAAACCAAGCGTAGCTATTGTTATTGGTGTTTTCACTATCCTCTTCTCTCTCACCTTTCTCCTTCTTCTCTACATTAAACACATCAACAACAGCAACACCACCGGTGAGACAATTAACATTGACAGTAGTAGCTTTGTCGGCAGCGGCGGCGGAGTCTCGTCTTTTGCCGGTGGAAGGAAAAATTCCGGTATAGACCGATCGGTAGTTGAATCGTTGCCGATTTTCAGATTCGGATCACTTACAGGCCAAAAGGAAGGTCTAGATTGCGCGGTTTGTCTTTCCAAATTCGAATCTTCAGAAGTTTTACGTTTATTGCCGAAATGCAAACACGCATTTCATGTGGAATGTGTTGATACGTGGTTGGATGCACACTCAACTTGTCCTCTTTGCCGTTACAGAGTTGATCCTGAAGACATTCTTCTAGTAATGGAAGATTCATCTTCATCGCAACAGATTCAGAATCAAAAAGAAGAAAATGATGAATGTGTTGTGGAGATTGAAATTGAAAAAGGAAAAATGATGAGAAACGAGATTGAAGAGTATTATCGAAAGAGACATTCATCGGTAGGGGAAAAAGAATCCGAAAGAAAGAAAACGGCTTCGTTTAGATGGTCTCTGGATAGTTCTAGAAAGAAGAATGAGAATTCTGCTGGACTTGGGCTTGGGCTTGGGCTTGGTTGTTTTGTTGGCCCTGGGCCCAGAAAAGACGGGATGTTGTTAACGAAAGAAGAAACGGAGACGGAGAGGAGGAGGAGGAGTAGCGTTGAACGGAGAAGATTGGAGCATAGGATTATTGTTTCACCTTCGATTACGAATATAAGAAGTGGGCTCCACAAGAATCAACGGTGGAGTGATGTAGAAGCGTGTGATTTGTTGTATCTAACTTCAGAGATGATGATAATGAGTGAGTCACGGAGAGTGAAGCATAGGAATAATGATAGTAGTTGGAATGGCAGAGGTGTAATTAATGAGAGAAGTGTGTCTGAAATCACGGGATTCACCAGGTTTCAAACCAGCAACACCAACAAGCAATAA 1236 0.4256 MLTHNHRHHMASSPSSFFNIFTLFLLLLQHSPIVVVAFTETSPPPTPIPEDATTIAQSQPQHTVTPFKPSVAIVIGVFTILFSLTFLLLLYIKHINNSNTTGETINIDSSSFVGSGGGVSSFAGGRKNSGIDRSVVESLPIFRFGSLTGQKEGLDCAVCLSKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVMEDSSSSQQIQNQKEENDECVVEIEIEKGKMMRNEIEEYYRKRHSSVGEKESERKKTASFRWSLDSSRKKNENSAGLGLGLGLGCFVGPGPRKDGMLLTKEETETERRRRSSVERRRLEHRIIVSPSITNIRSGLHKNQRWSDVEACDLLYLTSEMMIMSESRRVKHRNNDSSWNGRGVINERSVSEITGFTRFQTSNTNKQ* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3576 411 CDD RING-H2_EL5_like 155 198 - -
Mtr3g3576 411 PANTHER RING-H2 FINGER PROTEIN ATL43 35 410 - -
Mtr3g3576 411 Pfam Ring finger domain 155 198 IPR001841 -
Mtr3g3576 411 SUPERFAMILY RING/U-box 142 203 - -
Mtr3g3576 411 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Mtr3g3576 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 410 - -
Mtr3g3576 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 205 IPR013083 -
Mtr3g3576 411 SMART ring_2 156 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3576 Mtr-Chr3 49620644 49622542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3576 69 402 C3H Transcription Factor Family AT5G05810 46.974 4.99e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3576 K19041 - gmx:100794083 293.508