Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3574 ATGTTAATACAAAGTTCTCTTCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATATGATGATGGGAAAGATTTTCAACGTGACCGGATGCCTAGTGGTGAAACTTGTCAGGTTTGTCTGAAATGCAACAAGTACCCTGCTGACTGGTGTAGAAAAGCTGAACCAATGGAAGAGGATAATAGGAATGCTGATGATCCTTTCAACTCAAACTGTCTAAGAAGCTGTGGTCGACCATCAACTGCAAGTATAATGACCGAAAACACTGCACCTAATTTGGTATACAGGAGAAAAAAGCTACGCAAGGGATCAATTTCTTCTCCTTTCAAGCTAGGGCTGACCGATGTGCAGACAAGTGCCAATTTTACTTCATTCATAAGTTCCTCTTTGCACTTGTCATCAGCTGAGGACCAAACAGCTGTTTTTCCAGTTAAGCATCAAATTGAAATTGTCAAAGATCCTACTCTGCCTTCTGTCTTTCTTGATGGAGTAGCAAAAGATACCACACAGAAAAAAATAGGTATTGACAGTGTAAATGATAGCTGTTCCTCTTCAAAGTCAAATATGGTACTTGTTTCAGATTCCTTAGCAACTGAGATGGATGACACTGGTGAATGCTCCTCCTCTAGTTTAATAGTAACGGACTCCACAAGGGAAGAATTAACAGAAAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTCTTAGAGGAGATACTCTTACAGATAATGTGGTTTCCATTGAAGATGCCGTTACCACCGTTAATAACTGTTGTTCCAGATCATGCAAAATATGTGGTCATTTGGATAGTTCATTGAATATGCTTTTGTGTGATAATTGTGAAAACTCATATCATCCATGTTGCTACAATACACGTTTGAAAAGAGTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAATAAAAGGCAAAAATTTCTTAAGGAGACAATTATCAAATCACCACGTATCAACAGTGGAATAGGGAAATCTAGAACTGTCTCAGTTAAGGATGAAATGAATCCCATACTGTTGATGTTGAGAGATACTGAGCCATATACGACTGGTGTGCGAGTTGGCAAAGGTTTTCAAGCAGCAGTCCTTGACTGGTCAGGCCCTTTAAAAAGTGATGAAGACTACTTTCCAGAACCATTGCAAATTAATCCTTCAGAAATTTATAGACCGCAGGAAGAGAATATGAGAAATCCAACTAGACTCAGTTCCATTGGCAACTGGCTTCAATGCCGAGAGGTTATAGACAAAACTAGGGAAATTATATGTGGAAAATGGCGCAGGGCTCCACTATTTGAAGTTCAAACCGATGATTGGGAGTGCTTCTGTGCTTTTCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGGTGGAAACAGATGAGGTTCTGAAACAACTGAAGTATATAGAAATGTTGAGGCCACGACTTGCTGCAAAACAGAGAAAATCAGATTGCACAAATAATGGCAATTGA 1497 0.3914 MLIQSSLLSSVEAGLCYVYDDGKDFQRDRMPSGETCQVCLKCNKYPADWCRKAEPMEEDNRNADDPFNSNCLRSCGRPSTASIMTENTAPNLVYRRKKLRKGSISSPFKLGLTDVQTSANFTSFISSSLHLSSAEDQTAVFPVKHQIEIVKDPTLPSVFLDGVAKDTTQKKIGIDSVNDSCSSSKSNMVLVSDSLATEMDDTGECSSSSLIVTDSTREELTEKDFCINILRSHGLLRGDTLTDNVVSIEDAVTTVNNCCSRSCKICGHLDSSLNMLLCDNCENSYHPCCYNTRLKRVPIDEWFCHSCLNKRQKFLKETIIKSPRINSGIGKSRTVSVKDEMNPILLMLRDTEPYTTGVRVGKGFQAAVLDWSGPLKSDEDYFPEPLQINPSEIYRPQEENMRNPTRLSSIGNWLQCREVIDKTREIICGKWRRAPLFEVQTDDWECFCAFHWDPSHADCAVPQEVETDEVLKQLKYIEMLRPRLAAKQRKSDCTNNGN* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3574 498 SMART PHD_3 262 308 IPR001965 -
Mtr3g3574 498 SUPERFAMILY FYVE/PHD zinc finger 249 312 IPR011011 -
Mtr3g3574 498 Gene3D - 411 476 - -
Mtr3g3574 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 326 IPR013083 -
Mtr3g3574 498 Pfam PHD-finger 263 309 IPR019787 -
Mtr3g3574 498 PANTHER HISTONE ACETYLTRANSFERASE 30 491 - -
Mtr3g3574 498 ProSitePatterns Zinc finger PHD-type signature. 263 307 IPR019786 -
Mtr3g3574 498 PANTHER REMODELING AND SPACING FACTOR 1 30 491 - -
Mtr3g3574 498 ProSiteProfiles Zinc finger PHD-type profile. 260 310 IPR019787 -
Mtr3g3574 498 ProSiteProfiles Zinc finger CW-type profile. 407 467 IPR011124 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3574 248 308 C2H2 Transcription Factor Family AT3G01460 37.879 4.58e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr3g3574 PHD 4.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3574 - - gmx:100813057 752.281