Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3573 ATGAACACAAGCAAAGCCGAAGCAGAACGGTTACTTGAAATCGGAGAAGAACTCTTGCAGAAAAGAGATCTCAAAGGTTCAAGAGAAATTGCGAATCTGGTTCAAGAAACCGAACCTCTTCTTGAAGGTTCCGATCAGATCCTCGCAATTGTTGATGTTCTCGAAGCGGCGGAGAAGCCTCTCAATCTCAACAACCACCACCTCGATTGGTACGCCGTTCTTCAAATTGATCGCAATTCACAAGATCTCAATCGCATTAAGAAACAGTATCGTACTCTCGCTCTTCTTCTTCATCCTGATAAGAATCCGTTTTCTTATGCCGAACTCGCTTTCAAACTCGTTAAGGATGCTTGGGCTGTTTTGTCTGATCCGGTTCAAAAAGCACAGTATGATAAGGGTTTTGAATTTGAGCTATTGGGAAATGGAAATGGAAATGTGAATTTTTGGACTGCATGTCCTTATTGTTATCATATGTATGAATATCCTAGGGTTTATGAGGGTTGTTGTTTGATGTGTCAGAAATGTGATAAGTCGTTTCATGGTGTTTCGATTCCTTCTCTTCCGCCTATTGTTCCGGGACAAGAAGCTTATTATGTTTCTTGGGGAATGTTTCCGATGGGTTTTGTTTTTGAGAGTGTAGAAAATGGTGGTGCTGGCACTGGTGATTCTGCTGCGAAGAAGCGATAG 687 0.4192 MNTSKAEAERLLEIGEELLQKRDLKGSREIANLVQETEPLLEGSDQILAIVDVLEAAEKPLNLNNHHLDWYAVLQIDRNSQDLNRIKKQYRTLALLLHPDKNPFSYAELAFKLVKDAWAVLSDPVQKAQYDKGFEFELLGNGNGNVNFWTACPYCYHMYEYPRVYEGCCLMCQKCDKSFHGVSIPSLPPIVPGQEAYYVSWGMFPMGFVFESVENGGAGTGDSAAKKR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3573 228 Gene3D DnaJ domain 55 143 IPR036869 -
Mtr3g3573 228 Pfam DnaJ domain 69 131 IPR001623 -
Mtr3g3573 228 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Mtr3g3573 228 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 228 - -
Mtr3g3573 228 CDD DnaJ 69 123 IPR001623 -
Mtr3g3573 228 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 228 - -
Mtr3g3573 228 SMART dnaj_3 68 126 IPR001623 -
Mtr3g3573 228 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Mtr3g3573 228 PRINTS DnaJ domain signature 71 89 IPR001623 -
Mtr3g3573 228 PRINTS DnaJ domain signature 90 105 IPR001623 -
Mtr3g3573 228 PRINTS DnaJ domain signature 106 126 IPR001623 -
Mtr3g3573 228 PRINTS DnaJ domain signature 126 145 IPR001623 -
Mtr3g3573 228 SUPERFAMILY Chaperone J-domain 67 167 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3573 Mtr-Chr3 49585987 49586978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3573 2 226 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 50.413 7.96e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3573 - - mtr:MTR_3g100330 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2232 5 29205770 29207441 Mtr3g3573 3 49585987 49586978 PCT