Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3562 ATGCCAGAAAAGAAGTCTAAGAAAGTTACCTTCTCTGAAAACGCCATCGCCACAATCACACAACGGTATGACGTAGCGACTGTGTTGACGGTGTTTCAGGAATTATCACATTACGCTGCTGACGAGAATTTTAATTGGAATGAATTGGTGAAGAAAACCACCACTGGTATTTCTACTGCCAGAGAATATCAGATGCTATGGCGTCACTTGGCGTATGGTTATTCCTTTCCCGAAGATCTCGATCAAGAAGCTCAACCTATGGATGATGATAGTGACCTAGATTGCGAGCTGGAATCATTACCTTCTGGATGTGCGGAATCTACATCAGAGACTTCAGCATGTGTGAAGGTGATAATTGCTTCCCGCACACTAAGTGAATCTACCCCCAGTAGCGCAACAATTGAGGCTCCAATGACTGTAAATTTTCCTGTTTGCCATTCATCACGAACTTCAAATATTTCGCAGCCCTCTATCTTGATGGATCAGTCAAGCATTATGTTTCCAGTTACTGTCCCGAGACAGACACTGCCAACTGTATCATCAACCGATGCTTTAGAAACCAAGGTAACAATTGGTGGTACCGCAGCTTCCAAAAGGAAAAGAAAAGCATGGTCAGAGGAAGAGGACAATTTGCTACGGGATGCTGTTCAGAAATGGGGTGAAGGGAATTGGGCTACCATGGCAAAAGGAGACAGCTTTCCTATTAAGAGAAGTGCAACACAATTGTCTCAGAGGTGGAGTGCTTTAAGAAAGAAAGACGGCAGTGCCAATCCAGGACCCACCGCGACCACTGTGACCACCAACACACAGTATACTGCTGAACAGTTGGCAACTCGTCACTCCTTAAATTTAGCCCTTGACATGCCATTCAAAAAGTTATCTGCTCCTGGAGTGACTGATCCTGGTAGGACATCCACATCAATAAAAAATCAAGTGCAGCCTCGTAATACGGCGCAATTCTCCACAATTCGTAGTTCTGTACCATCTCAACGTCCGGCTCAACAAGCTTGTGGTTCCCCTACGAAACCCAAACTGGCCTCTGAAAATTCAGTCTCAAAGTGTAATGCAATGTCTGCTCGTGAGTCAAAACCTGGCATTGTTCATTCTGGAGCGCAAACACAAACTGTTTCGCGAACAAATGCTGCGCCACATTTGATGGTTTCTCAAGCAAAAAATGTGGCACATACTGTTCCTGCTTGCAGTACTTTGACAAAGACACCCATTTCTGCTGGTGGGCACCAAAAGATTCGTTCAAATGTGCCTGCTGGTAGTTCTTTGACAAAGACACCCATTTCTACTGGTTTGGCTCCTGTTCAGCCAAATGTAAATGTGCCTGACGGTAGGTCTTTATCAAGAACACCCATTGCTGCTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAATGTGCATGTTGGTAGTTCTTTGACGAAGATACCCATTTCTGCTGGTTTGCCTTCTAACCAAAAGGTTTATTCAAATGTGCCTGCCGCTAGTTCTTTGACGAAGACACCCAATTCTGCCGGTTTACCTTCTGACCCAAAGGTTCATTCAAATGTAGCTGCCGGTAGTTCTTTGCCAAAGACACCCATTTCTGCTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAATGTACTTGCTGGTAGTTCTTTGACAAAGCCACCCATTTCTGTTGGTTTGCCTTCTGACCCAAAGGTTCATTCAAATGTGTCTACTGGTAGTTCTTTGACAAAGACACCCATTTCTGCTGGTTTGCCTTCTAACCAAAAGGTTCATTCAAATGTGCCTACTGGTAATTCTTTGACAAAGACACCCATTTCTTCTTGTTTGCCTTCCAACCAAAAGGTTCATTTAAATGTGTCTGCCGGTAATTCTTTGACGAAGACACCCATTACTGCTGGTTTGCCTTCTAATCAAAAGGCTCATTCAAACGTGCCTGCCGGCAGTTCTTTGACGAAGACGCCCATTACTGCTGGTTTGCCTTCTAATCAAAAGGCTCATTCAAACGTGCCTGCCGGCAGTTCTTTGACGAAGACACCCATTTCTGTTGGTTTGCCTTCTAACCAAAAGGCTCATTCAAACGTGCCTGCCGGCAGTTCTTTGACGAAGACGCCCATTTCTGTTGGTTTGCCTTCTGACAAAAAGGTTCATTTAAATGTGCATGTTGCTAGTTCTCTGACAAAGACACCCATTTCTGCTAGTTCACCTTCTAACCAAAAGGTCCATTCAAATGTACCTGTCGGTAGTTCTTTGACGAAGACACCCATTTCTTCTGGTTTGTCTTCTGACAAAAAGGTTCATTCTAATGTACCTGTTGCTAGTTCTCTGACAAAGACACCCATTTATGCTGGTTTGCCTTCGGGCCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACAAAGACACCCGTTTCGGCTAGTTCGCCTTCTGACCCAAAGGTTCATTCAAATGTACCTGCTGGTAATTCTGTGACAAAGACACCCATTTCGGCTGGTTTGCCTTCTGACCCAAAGGTTCATTCAAATGTGCCTGCTGGTAATACTTTGACAAAGACACCCATTTCCGCTGGTTTGCCTTCCGACCCTAAGGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACAAAGATACCCATTTCCGCTGGTTTTCCTTCGGACCCAAAAGTTCATTCAAATGTGCCTGCTGGTAATTCTTTGACTAAGACACCCATTTCTGCTTGTTTGCCTTCTGACCCAAAGGTTCATTCAAATGTGCTTGCTGGCAATTCTTTGACAAAGACACCCATTTCCACTGGTTTGCCTTCTGACCAAAAGGATAAACATGTTACCTCTGTGAAAGAAGAGGAAAAAAGACTCGCTGAGCCTGGCTCCACACCAAAAGAGAATGTGAAAGAGGAAGCTTCTACATCTACTACTGAGGGCCAGGTAAATAGAAAACTGGATAAGGCGAGGCTAGATTTAGATAAAGCTAAAAGCATGCCCAGTGAGGAAGTTTTGGAACACAAAGCAGTGCCTCAAAATCCTGTAGGGTCTGAAGAGCGAGGAAGTGTTAAGAATTCAAATTTTACCCCCAACAAGGCCACTGAGAATGGAAATGACAATTTGAATAAGGAAAGTCAAAATCTAAATCAAGACAAGAAGACAAGTTCTGTTAATGAAAACTCTCAGCATCAGAACATGAAAGAGAAACTCGTAAATTTGCCAAAACAAGATGAATGTCGTCAAGGTTTGGAAGTGCCGTGA 3246 0.4378 MPEKKSKKVTFSENAIATITQRYDVATVLTVFQELSHYAADENFNWNELVKKTTTGISTAREYQMLWRHLAYGYSFPEDLDQEAQPMDDDSDLDCELESLPSGCAESTSETSACVKVIIASRTLSESTPSSATIEAPMTVNFPVCHSSRTSNISQPSILMDQSSIMFPVTVPRQTLPTVSSTDALETKVTIGGTAASKRKRKAWSEEEDNLLRDAVQKWGEGNWATMAKGDSFPIKRSATQLSQRWSALRKKDGSANPGPTATTVTTNTQYTAEQLATRHSLNLALDMPFKKLSAPGVTDPGRTSTSIKNQVQPRNTAQFSTIRSSVPSQRPAQQACGSPTKPKLASENSVSKCNAMSARESKPGIVHSGAQTQTVSRTNAAPHLMVSQAKNVAHTVPACSTLTKTPISAGGHQKIRSNVPAGSSLTKTPISTGLAPVQPNVNVPDGRSLSRTPIAAGLPSNQKVHSNVHVGSSLTKIPISAGLPSNQKVYSNVPAASSLTKTPNSAGLPSDPKVHSNVAAGSSLPKTPISAGLPSNQKVHSNVLAGSSLTKPPISVGLPSDPKVHSNVSTGSSLTKTPISAGLPSNQKVHSNVPTGNSLTKTPISSCLPSNQKVHLNVSAGNSLTKTPITAGLPSNQKAHSNVPAGSSLTKTPITAGLPSNQKAHSNVPAGSSLTKTPISVGLPSNQKAHSNVPAGSSLTKTPISVGLPSDKKVHLNVHVASSLTKTPISASSPSNQKVHSNVPVGSSLTKTPISSGLSSDKKVHSNVPVASSLTKTPIYAGLPSGPKVHSNVPAGNSLTKTPVSASSPSDPKVHSNVPAGNSVTKTPISAGLPSDPKVHSNVPAGNTLTKTPISAGLPSDPKVHSNVPAGNSLTKIPISAGFPSDPKVHSNVPAGNSLTKTPISACLPSDPKVHSNVLAGNSLTKTPISTGLPSDQKDKHVTSVKEEEKRLAEPGSTPKENVKEEASTSTTEGQVNRKLDKARLDLDKAKSMPSEEVLEHKAVPQNPVGSEERGSVKNSNFTPNKATENGNDNLNKESQNLNQDKKTSSVNENSQHQNMKEKLVNLPKQDECRQGLEVP* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3562 1081 SMART sant 200 252 IPR001005 -
Mtr3g3562 1081 Coils Coil 1026 1053 - -
Mtr3g3562 1081 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 521 - -
Mtr3g3562 1081 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 711 819 - -
Mtr3g3562 1081 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 820 1080 - -
Mtr3g3562 1081 Gene3D - 194 255 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 978 999 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 940 962 - -
Mtr3g3562 1081 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 254 IPR017930 -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 786 838 - -
Mtr3g3562 1081 ProSiteProfiles Myb-like domain profile. 196 250 IPR001005 -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 408 465 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 963 977 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 299 357 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 628 680 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 295 375 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 563 607 - -
Mtr3g3562 1081 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 820 1080 - -
Mtr3g3562 1081 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 711 819 - -
Mtr3g3562 1081 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 521 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 1013 1064 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 500 537 - -
Mtr3g3562 1081 Pfam Myb-like DNA-binding domain 201 246 IPR001005 -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 408 448 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 792 831 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 728 771 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 555 607 - -
Mtr3g3562 1081 SUPERFAMILY Homeodomain-like 199 252 IPR009057 -
Mtr3g3562 1081 CDD SANT_TRF 202 251 - -
Mtr3g3562 1081 MobiDBLite consensus disorder prediction 926 1081 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3562 Mtr-Chr3 49483091 49491005 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g3562 Myb_DNA-binding 5.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3562 - - mtr:MTR_3g100180 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3562 3 49483091 49491005 Mtr3g3562 3 49483091 49491005 ECH