Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3554 ATGTACAACTCTATGAACATGTCCGACCAGATCAAGAACAACGAAGATCCTGACAACAACAACAATCACATCCATTTCGATTCACCAACCCTCGAAGATGCTTCCGGCGAAGGTGAAGGTCAAATCAATGATGTTTCACTCGAAAATGTTTATGTGTCCGGCGATGGAAACCACCCTGATATGTCTGTTCAACAATTCGACGATTCTAGCCAGCTCACACTTTCGTTTCGTGGCCAAGTTTATGTCTTTGATTCTGTTACCCCTGAAAAGGTTCAATCAGTGCTGTTACTGTTAGGTGGATGTGAATTAAATCCGGGTTCACAATGTTTGGACACATCGCCTCTAAATCAGAGGAGTGGTGCTGAATTTCCTACAAGATGTAGTCAACCGCAACGAGCAGCGTCCTTGATTAGGTTTCGTCAGAAGAGGAAAGAGCGAAACTTTGATAAGAAAGTTAGATATGAAGTGCGTCAAGAAGTTGCACTAAGGATGCAACGTAGCAAGGGTCAATTTACATCAGCTAAGAAACAAGATGGAGGTAACAGTTGGGGTTCTGATCCCGAGTCAGGGCAAGATGTAGTTCAATCAGAAACGTCATGCACACACTGTGGAATCAGTTCAAAATCCACCCCTATGATGCGAAGGGGGCCGTCTGGCCCTAGGACACTATGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGGTACTTTGAGGGATCTATCTACTGCTAGGAGAAATCACGAACAACATACTCTTGGGTCACCTGAGCAGGGTATGAGGGATCTATCTAATCCTAAGAGAAACCACCAACCGCACCCTCTTCCACAACCTGAGCAGGTCGGCGAGGGTAATGAGGACTTGAACTGTGGGACTGCTCCTGCGCATAACGATTCTGTTGATGATAAAACAGCCGTGGTATCCGATCAATGA 930 0.457 MYNSMNMSDQIKNNEDPDNNNNHIHFDSPTLEDASGEGEGQINDVSLENVYVSGDGNHPDMSVQQFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELNPGSQCLDTSPLNQRSGAEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSAKKQDGGNSWGSDPESGQDVVQSETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTARRNHEQHTLGSPEQGMRDLSNPKRNHQPHPLPQPEQVGEGNEDLNCGTAPAHNDSVDDKTAVVSDQ* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3554 309 MobiDBLite consensus disorder prediction 1 40 - -
Mtr3g3554 309 MobiDBLite consensus disorder prediction 1 15 - -
Mtr3g3554 309 SMART tify_2 65 100 IPR010399 -
Mtr3g3554 309 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Mtr3g3554 309 Pfam tify domain 69 99 IPR010399 -
Mtr3g3554 309 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Mtr3g3554 309 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Mtr3g3554 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 248 - -
Mtr3g3554 309 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Mtr3g3554 309 PANTHER GATA TRANSCRIPTION FACTOR 28 13 291 IPR045280 GO:0006355
Mtr3g3554 309 PANTHER GATA TRANSCRIPTION FACTOR 25 13 291 - -
Mtr3g3554 309 MobiDBLite consensus disorder prediction 242 309 - -
Mtr3g3554 309 CDD ZnF_GATA 199 241 IPR000679 GO:0006355|GO:0043565
Mtr3g3554 309 Gene3D - 191 251 IPR013088 GO:0006355|GO:0008270
Mtr3g3554 309 Pfam CCT motif 132 174 IPR010402 GO:0005515
Mtr3g3554 309 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Mtr3g3554 309 MobiDBLite consensus disorder prediction 166 195 - -
Mtr3g3554 309 ProSiteProfiles GATA-type zinc finger domain profile. 194 250 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3554 Mtr-Chr3 49381985 49387612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3554 69 307 Tify Gene Family AT4G24470 54.772 5.43e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr3g3554 CCT 9.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3554 - - lja:Lj0g3v0164269.1 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3554 3 49381985 49387612 Mtr3g3554 3 49381985 49387612 ECH
Mtr5g2246 5 29406620 29411519 Mtr3g3554 3 49381985 49387612 PCT