Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3553 ATGGCGGAACAACCTCTTCCATCTGAGGATCCTGCAACAATTCCAGCTATTGATGACGACGACGACGACGATGAGGACTACACTGATGATGGTGATGATACCATGGATGAATTGGATGAAGAATCAAATGGAAATTCAGTGAACGTTGAAGGTACTTCAATTCCTGCAACTGCAACTGCAGCTGCAGCTGCAACTCGTATTGGTGAACTCACTCTTTCTTTTGAAGGCGAGGTTTATGTCTTCCCCGATGTCACACATCAGAAGGTGCAAGCTGTTTTGCTGTTTTTGGGAGGAAGTGGTGCGCAGCCAGGCATGCCTACAGCTGAACTGCCATTTGATCAGAATAACAGGGGCATGGGCGGTATTGGAAAGCTTCCAAATCTTTCACGAAGAATAGCTTCCTTGGTCAGGTACCGTGAAAAACGCAAAGAAAGATGTTTTGACAAGAAAATTAGATACACCGTGAGAAAAGAGGTGGCAGAAAGGATGCATCGGGAAAAGGGGCAGTTTGCACCCTTGAAGCAAAGCCCTGGTTCCTCTAGCTGGAATTCAGCACAGGGTGCTGGTCAAGATGGCAGTCCTAATCCTGAATCTCTACGTAGATGTCAACATTGTGGAGTCAATGAAAATAATACTCCTGCAATGCGCCGCGGACCAGCTGGACCAAGAACGTTATGTAATGCATGCGGCCTCATGTGGGCCAACAAGGGGACACTCAGAGATCTCAGTAAGGGTGGAAGAAATATTTCTGTTGAGCAAAGTCGTCCGGACCCTCCTGTTGATGTCAAGCCAACTGTTCTTGAAGGGGAATTCTCTGTCATTGAAAATGAACAAGGTATTTCTGAAGAACCTTCCAAGACTGTTGGTGCTGAAGTTTTGAATGATCATGCATCAAACCCTGGTGATGAGGAATTGTCTGAATCTGCAGAACACCTAACAAAAACACTGCCATTGGTAATTTATCATTCTTCGGAAAATGATGATGAGCAGGAACCCGTGGTCGAGCTTTCTAATCCTTCAGATGCAGGAATGTCTAATCCTTCAGATACAGATATTGACATTCCTGGAAACTTTGATTAG 1080 0.4528 MAEQPLPSEDPATIPAIDDDDDDDEDYTDDGDDTMDELDEESNGNSVNVEGTSIPATATAAAAATRIGELTLSFEGEVYVFPDVTHQKVQAVLLFLGGSGAQPGMPTAELPFDQNNRGMGGIGKLPNLSRRIASLVRYREKRKERCFDKKIRYTVRKEVAERMHREKGQFAPLKQSPGSSSWNSAQGAGQDGSPNPESLRRCQHCGVNENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNISVEQSRPDPPVDVKPTVLEGEFSVIENEQGISEEPSKTVGAEVLNDHASNPGDEELSESAEHLTKTLPLVIYHSSENDDEQEPVVELSNPSDAGMSNPSDTDIDIPGNFD* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3553 359 CDD ZnF_GATA 201 245 IPR000679 GO:0006355|GO:0043565
Mtr3g3553 359 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 5 359 - -
Mtr3g3553 359 MobiDBLite consensus disorder prediction 1 52 - -
Mtr3g3553 359 MobiDBLite consensus disorder prediction 173 197 - -
Mtr3g3553 359 Pfam tify domain 70 97 IPR010399 -
Mtr3g3553 359 PANTHER GATA TRANSCRIPTION FACTOR 28 5 359 IPR045280 GO:0006355
Mtr3g3553 359 Gene3D - 195 255 IPR013088 GO:0006355|GO:0008270
Mtr3g3553 359 MobiDBLite consensus disorder prediction 276 359 - -
Mtr3g3553 359 MobiDBLite consensus disorder prediction 14 40 - -
Mtr3g3553 359 Pfam GATA zinc finger 202 238 IPR000679 GO:0006355|GO:0043565
Mtr3g3553 359 ProSiteProfiles CCT domain profile. 131 173 IPR010402 GO:0005515
Mtr3g3553 359 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355|GO:0043565
Mtr3g3553 359 Pfam CCT motif 131 171 IPR010402 GO:0005515
Mtr3g3553 359 MobiDBLite consensus disorder prediction 244 263 - -
Mtr3g3553 359 ProSiteProfiles Tify domain profile. 63 98 IPR010399 -
Mtr3g3553 359 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 249 - -
Mtr3g3553 359 MobiDBLite consensus disorder prediction 164 199 - -
Mtr3g3553 359 SMART tify_2 63 98 IPR010399 -
Mtr3g3553 359 SMART GATA_3 196 249 IPR000679 GO:0006355|GO:0043565
Mtr3g3553 359 ProSiteProfiles GATA-type zinc finger domain profile. 196 255 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3553 Mtr-Chr3 49369647 49378786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3553 69 244 Tify Gene Family AT1G51600 55.615 1.11e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr3g3553 CCT 4.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3553 - - gmx:100801328 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3553 3 49369647 49378786 Mtr3g3553 3 49369647 49378786 ECH