Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3551 ATGACCAACACTTTCTCCCAGTTAATACAACAGTACAAAGCACTATTAAAGAAAAACATATTAATCTCGTGTCGAAGCAAGACATCTATCCTTCTCCAGATGCTCTCACCGGTCATATTCATTTTCCTAATATCCGCCATAGACAAAGCAATCGAAGTACAAACCTCAACAACTACGCAGTATAAGTCCACAATACATCCTTCGCCAAAACCTTCACCACCAATCCCACCTTGTGAAAACAAATTCTTTGTTAAAGAGCCTTGCTATGATTTTATCTGGAGCGGTGATACTAACCCAAAGTTTCACACCATCGTGGAGCGTATCATGAATAATAACCCTGGTAGACCCATACCTATCTCTAAGGTTAAGTCATTTCATGATAAAGCACTAGTTGATCAGTGGTTTCTTAATAATCCTATGCAATGTCCCGGTGCAATTCATTTTTGGGAAAAGTATGATGGTGTTATCAGTTATGGGATTCAGACTAATTCCAGTAGTGTTCAGAAGCGCGGGAAATATGAAGATCCTAATTTTTCTTTTCAACTTCCACTTCAGCTTGCTGCTGAACGGGAAATCGCCAGATTTCTTATTGGAGACCCAAGCTTCAAGTGGAATGTGTTTTTGAAGGAATTTGCGCACCCAGCCATGAGTCCTCCCTCTGCTGTTGGATCAATCGGTCCAGTATTTTTTCTTGCAATTGCTATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTCGCAGAGAAAGAGCTCAAACTTCGCCAGGCAATGACAGTGATGGGGCTTTACGACTCTGCATACTGGTTATCATGGCTAACCTGGGAAACAGTTGTTACACTCCTATCATCTATTCTCGTAGTTCTCTGTGGCATGATTTTTCAGCTTCGTTTCTTTTTGAAAAACAGTTTCGCTGTTCTGTTCTTTTTGTTCTTCCTATTTGAATTTAACATGACTGGGTTGGCCTTCATGTTATCGGCTTTTATTGGAAAATCATCGTCGGCAACAACAGTCGGCTTCTCCATATTTATTGTCGGCTATGTGACTCAGCTCGTGGTGCAAGTAGGATTTCCTTACAATTATATCTTCTCTGTTACTGTCCGAAAATTATGGTCATTGTTTCCGCCTAATCCTTTTGCTCAAGGCTTGCGTGTGCTTTCACATGCCGTCTCAACCCCTGAAGATAACGGTGTTAGCTGGAGTAAACGGGGATCATGCGCCACTAACGACAACAACTGTGTGATGACAATTAATGATATTTATAAATGGCTTCTGGCCACATCCTTTCTGTGGTTCATTCTAGCCATCTATTTTGACAATATAATCCCAAATGCAATGGGTGTGAGGAAATCTATGTTATACTTTCTAAATCCTCGTTATTGGACGGGAAACGGAGGACAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCATATTTTCAACCAGACATGAAGAGAATAGTATGCCAGATGATGACGATGTCCTTGAAGAAGAAAACGTTGTGAAACAGCGACTAACACAAGGCGTGGTTGATGCAAACGTTGCTGTTCAGTTACATGGCATCGTGAAGACTTATCCCGGTACATATAACATTGGTTTGTGCTGTAAATGTAAAAGAAGTGCTCCTTACCATGCTCTTAAGGGCTTGTGGTTGAACTTTACAAAGGATCAGTTATTTTGTCTTTTAGGACCGAATGGAGCTGGAAAGACTACAGTTATTAATTGTTTGACAGGGATAACTCCAGTAACAGATGGAGATGCATTGATTTATGGACATTCTATCCGTAGCTCCACTGGCATGTCAAACATTCAAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCCTATGGGATGCACTCTCTGGTGAAGAACACCTCGAACTCTTTGCTAGTATCAAAGGCCTGTCCCCAGCATCTGTAAAATCAATTACTCAGACATCATTGGCAGAGGTGAGACTCATGGATGCAGCCAAAGTAAGATCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATCGGTGACCCTAAATTAGTTATTTTGGATGAACCGACTACCGGTATGGATGCAATAACAAGGAGGCATGTGTGGGACATCATCCAAAGTGCAAAAAGAGGGCGTGCCATTGTTCTTACAACACATTCTATGGAAGAAGCAGACATTCTAAGTGACCGCATAGGAATCATGGCAAAGGGAAAGCTCCGATGCATTGGTACCTCAATCAGATTGAAGTCACGCTTCGGTACTGGTTTTATTGCTAATATTAACTTCTATAGAAACAATAATGAAAAGATTCCTGAAAATGGTGATGCAATATCTACAAGACAGCATGAAGCTGTGAAACAATTCTTTAAGAATCGTTTAGATTTAGTACCAAAAGAGGAGAATAAAAACTTTCTAACTTATGTGATTCCTCATGAAAGAGAGGCACTCCTTACAGATTTTTTTACAGAGCTCCAAGATAGAGAAAAAGAATTTGGCATATCTGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAAACAAGCAAAGCTAGAAAGTGCTGCAGCTGAAGGGAGCTTAGTGACTTTGACCTTGAAATCTGGAGAGTCTGTGCAGATTCCAGTAGGAGCTATGATTGTGGGAATTCCTGGATCAGAGTCTGCTGAATATCCCACAGGGTTTATGGTACAAGTACACTGGGAGCAAGATGACACTGGCGCTCTTTGCATCGCTGGCCACTCGCAGAAAGCTCCTGTTCCTCAAAAGATCCAACTACCATCGTCTCCTACTGCAAGACAACGCCGGTCAGCGTTAGTCCACGGGGTTGTGATTGATCCAAGTCAAGTTAGTTTAGTCAATTTTCAGTAA 2883 0.4128 MTNTFSQLIQQYKALLKKNILISCRSKTSILLQMLSPVIFIFLISAIDKAIEVQTSTTTQYKSTIHPSPKPSPPIPPCENKFFVKEPCYDFIWSGDTNPKFHTIVERIMNNNPGRPIPISKVKSFHDKALVDQWFLNNPMQCPGAIHFWEKYDGVISYGIQTNSSSVQKRGKYEDPNFSFQLPLQLAAEREIARFLIGDPSFKWNVFLKEFAHPAMSPPSAVGSIGPVFFLAIAMFNFVLQMSSLVAEKELKLRQAMTVMGLYDSAYWLSWLTWETVVTLLSSILVVLCGMIFQLRFFLKNSFAVLFFLFFLFEFNMTGLAFMLSAFIGKSSSATTVGFSIFIVGYVTQLVVQVGFPYNYIFSVTVRKLWSLFPPNPFAQGLRVLSHAVSTPEDNGVSWSKRGSCATNDNNCVMTINDIYKWLLATSFLWFILAIYFDNIIPNAMGVRKSMLYFLNPRYWTGNGGQKVKEGGVCSCIFSTRHEENSMPDDDDVLEEENVVKQRLTQGVVDANVAVQLHGIVKTYPGTYNIGLCCKCKRSAPYHALKGLWLNFTKDQLFCLLGPNGAGKTTVINCLTGITPVTDGDALIYGHSIRSSTGMSNIQKLIGVCPQFDILWDALSGEEHLELFASIKGLSPASVKSITQTSLAEVRLMDAAKVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDAITRRHVWDIIQSAKRGRAIVLTTHSMEEADILSDRIGIMAKGKLRCIGTSIRLKSRFGTGFIANINFYRNNNEKIPENGDAISTRQHEAVKQFFKNRLDLVPKEENKNFLTYVIPHEREALLTDFFTELQDREKEFGISDIQLGLTTLEEVFLNIAKQAKLESAAAEGSLVTLTLKSGESVQIPVGAMIVGIPGSESAEYPTGFMVQVHWEQDDTGALCIAGHSQKAPVPQKIQLPSSPTARQRRSALVHGVVIDPSQVSLVNFQ* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3551 960 Pfam ABC transporter 545 690 IPR003439 GO:0005524
Mtr3g3551 960 SMART AAA_5 554 738 IPR003593 -
Mtr3g3551 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 743 IPR027417 -
Mtr3g3551 960 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 6 932 - -
Mtr3g3551 960 Gene3D - 516 762 IPR027417 -
Mtr3g3551 960 Pfam ABC-2 family transporter protein 29 436 - -
Mtr3g3551 960 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 515 761 IPR003439 GO:0005524
Mtr3g3551 960 CDD ABC_subfamily_A 515 749 - -
Mtr3g3551 960 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 6 932 IPR026082 GO:0016021|GO:0055085|GO:0140359
Mtr3g3551 960 ProSitePatterns ABC transporters family signature. 663 677 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3551 Mtr-Chr3 49341548 49347290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3551 545 784 Calmodulin-binding Proteins AT2G36910 23.108 8.52e-09 57.8