LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g3547	ATGGATGGATCAGCTGGCCCTGGTGGTGGAAACGTGAACGAGTTTCTACGAAACTATAAAATAGGAAAAACACTTGGTATAGGGTCCTTTGGCAAAGTGAAAATTGCAGACCATGTATTGACCGGTCAAAAAGTTGCCATAAAGATTCTTAACCGCAGCAAGATGAATATCATGAAAATGGAAGAAAAAGTTAGAAGAGAAATAGAAATTTTAAAAATGTTCATGCATCATCACGTTATACGCCTTTATGAGGTTGTAGAAACCTCAACAGACATATATATGGTGATGGAATATGCGGAAAATGGAGATCTCTTTGACTACATAGCACAAAAGGGTAGGTTGCAAGAAAACGAAGCTCGCACATTCTTCCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAAGACTATGGTAGCTCATAGAGACCTGAAACCTGAAAATATACTTTTGGACTCAAAAAAGAGTGTCAAAATTGCTGATTTTGGCTTGAGCAGCAACATGCGTGATGGTCACTTACTTAATACAAGTTGTGGAAGCCCTAACTATGCAGCTCCAGAGGTTATCTCTGGGAAATCTTATGTTGGACCTGAAGTAGATGTTTGGAGTTGTGGTATAATTTTATACGCACTTCTCTGCGGCAGTCTTCCTTTTGATGATGTAAATACTCCACAACTCTTCAGAAAAATGAAGGCTGGGATATATACTTTTCCAAGTCATCTTTCTCCTGATACTAGAGATTTGATAACAAGGTTGATTGTGGTTGATCCCATGAAAAGGATGACCATACCTGAGATGCGCCAACACCCATGGTTCAAAGTTGGTCTGCCACGTTATTTGGCGATGCCACCGACAAATACACTTCAACAGGTCAAAAAGATTGATGTGGACATTCTTCAGGAGGTGGTTAATAGGGGATTTGACAAGAATCAATTGATTGAGTCCCTTAGCAACAGGGTGCAAAATGAGGGTACTGTAACTTACTATTTGTTATTGGACAATCGTTTTTGTGTTTCCACTGGCTATTTTGGAGCTGAATTTCAAGAGACAAATGATTCTAGCTTGAACCATATCCACTCCGGTGAAGTTGCTTCTCCAGTTGGTGGGCACTGCTTTTCAGAGAATATGGATTATCAAGGAGTAGGAATGAGGCACCAGTTCCCTGTTGAGAGAAAATGGACTCTTTGCCTTAAGTCTCAAGCCCAACCTCATGAGATAATGACTGAGGTCCTTAAAGCTCTGGAACAATTGAATGTTTATTGGGAACAAATTGGACCCTATAAGATGAAGTGCAGAAGGGATGTTGGCATCCTTGGTCATCATGGAGGAATGGTTAACAATTATGTGGTCCTGTTCAAAGTGCAGTTCTCATGGTATAGGGGCCATGGTAATCTAGTGTCTGGGTCAGGAGCTGAGGAGATCATGAACCCACCGTCGTCGAAGAGATTAAAGCTCAACGATAGTGAAAACGAAGATAGACTCAGTGACTTACATGACTATATTATCCTCCACATACTGTCTTTTCTGAACGCTAAAGACGCGGTTGGAACTTGCATTTTGTCCCCAAGATACAAGGATCTCTGGAAACAACTTCCAAATCTTACATTGTGTTCCTATGACTTTCGAACTTTCAAGATATTCACCAACTTTGTGTCTAAGGTTTTATCTCTTCGTGATTCCTCTATCGCACTCCACGCTCTAGAATATTCCAAGAGTGGTTGCATTGAGCCTCGCCAACTCAAAAAGGTTGTGAATTATGCTATTTCACACAATGTCCAAGAGTTAAAACTATCTTATCTGTGTGACATTGAACTAATTTCCAATAGCATCTTTTCATGCAAGACTTTAACATGTCTTAAGCTCTATGCTTACCCTAGAACAGATATTAAGGAAAAAACATTGTTTCCAAAATCTCTCAATTTGCCAGCATTAACTATCTTGCATCTAGGGAATTTCGCCTTTTGTCCCAGTGATAATAATCCACAGGTCGAACCATTTTCAACCTTTAAACGGTTGAATAGTTTGGTCCTTTACAATTGTGCTTTGAAGGATGCAGTAACCCTTTGCATATCAAGTGCCACACTAGTCAATTTTACAGTGCGTAGTTACTCCTATGATTATTACAAAATCGAGCTCTGCGCTCCATGTCTTGGTACATTTGCTTTCATTGGTAAACCATTTCAGAAATTATCTGGGAGCAGTCTTTCTTATGTCAAGCATGTAGATATTGATGCAGAGATTCTGTCAATGGAAATGGAGCCTCCACTGTTTCTACTAAACTGGTTGTTTAAGCTCACTAATACAAAATCATTGACAGTCACCGCAAGTACTCTTCAGATCAAGCTCCCGTCCTTAGGTAACTTGAAGTCATTGAAAGTGAAAAGGGAACCACTTGCATATAGGTTTCGCAAGATGCTGATGGAGGCCAAGTTACAGGAAATTAAGTCGCGGAAAGAAGCTGCAAAGTTAAGAAAATCGTTTAAAGCAGGATTGGAACCATCTGCACCCATACCCGATGGAATAATTAACTTCTTGCTTCAAAATTCGCCATCGGCACAAGTTTACATGGTAGATTGCTGA	2577	0.4012	MDGSAGPGGGNVNEFLRNYKIGKTLGIGSFGKVKIADHVLTGQKVAIKILNRSKMNIMKMEEKVRREIEILKMFMHHHVIRLYEVVETSTDIYMVMEYAENGDLFDYIAQKGRLQENEARTFFQQIISGVEYCHKTMVAHRDLKPENILLDSKKSVKIADFGLSSNMRDGHLLNTSCGSPNYAAPEVISGKSYVGPEVDVWSCGIILYALLCGSLPFDDVNTPQLFRKMKAGIYTFPSHLSPDTRDLITRLIVVDPMKRMTIPEMRQHPWFKVGLPRYLAMPPTNTLQQVKKIDVDILQEVVNRGFDKNQLIESLSNRVQNEGTVTYYLLLDNRFCVSTGYFGAEFQETNDSSLNHIHSGEVASPVGGHCFSENMDYQGVGMRHQFPVERKWTLCLKSQAQPHEIMTEVLKALEQLNVYWEQIGPYKMKCRRDVGILGHHGGMVNNYVVLFKVQFSWYRGHGNLVSGSGAEEIMNPPSSKRLKLNDSENEDRLSDLHDYIILHILSFLNAKDAVGTCILSPRYKDLWKQLPNLTLCSYDFRTFKIFTNFVSKVLSLRDSSIALHALEYSKSGCIEPRQLKKVVNYAISHNVQELKLSYLCDIELISNSIFSCKTLTCLKLYAYPRTDIKEKTLFPKSLNLPALTILHLGNFAFCPSDNNPQVEPFSTFKRLNSLVLYNCALKDAVTLCISSATLVNFTVRSYSYDYYKIELCAPCLGTFAFIGKPFQKLSGSSLSYVKHVDIDAEILSMEMEPPLFLLNWLFKLTNTKSLTVTASTLQIKLPSLGNLKSLKVKREPLAYRFRKMLMEAKLQEIKSRKEAAKLRKSFKAGLEPSAPIPDGIINFLLQNSPSAQVYMVDC*	859

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g3547	858	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
	Mtr3g3547	858	SUPERFAMILY	Protein kinase-like (PK-like)	15	272	IPR011009	-
	Mtr3g3547	858	Gene3D	Transferase(Phosphotransferase) domain 1	10	347	-	-
	Mtr3g3547	858	Gene3D	Kinase associated domain 1, KA1	395	459	-	-
	Mtr3g3547	858	Coils	Coil	803	823	-	-
	Mtr3g3547	858	ProSiteProfiles	Protein kinase domain profile.	19	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr3g3547	858	PANTHER	SERINE/THREONINE KINASE	9	448	-	-
	Mtr3g3547	858	SUPERFAMILY	RNI-like	588	693	-	-
	Mtr3g3547	858	ProSitePatterns	Protein kinases ATP-binding region signature.	25	48	IPR017441	GO:0005524
	Mtr3g3547	858	Gene3D	Ribonuclease Inhibitor	461	793	IPR032675	-
	Mtr3g3547	858	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	292	332	IPR015940	-
	Mtr3g3547	858	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	9	448	-	-
	Mtr3g3547	858	SMART	serkin_6	19	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr3g3547	858	CDD	STKc_AMPK_alpha	16	271	-	-
	Mtr3g3547	858	CDD	UBA_SnRK1_plant	293	333	-	-
	Mtr3g3547	858	SUPERFAMILY	F-box domain	490	551	IPR036047	GO:0005515
	Mtr3g3547	858	SUPERFAMILY	KA1-like	328	454	IPR028375	-
	Mtr3g3547	858	Pfam	Protein kinase domain	19	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g3547	Mtr-Chr3	49308895	49319773	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g3547	19	271	CBL-interacting serine-threonine protein kinases	AT4G24400	48.425	1.56e-82	269

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_AMPK	Mtr3g3547		Pkinase	2e-80	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g3547	K07198		-	gmx:547544	706.827