Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3540 ATGAGGAAGAAAAGAAAAGGAAGTGAAACTGATGCATCTACGGATCTGGGTGTTGTTAATTTGGATTTGGATCACGCTGGTTCTGTTGGATCGTCCAATTTGAAGTCTCATTACTCGTTAGAAGATTGTTGTAGGTTGAAGAAACGATGTAAAGAAGATGCTGACATTCACATTGAATTTGAAGGTTCTTTTAAAAGTAGGCTTGCTGGCATTGCTACTGCACCGCCTTTTGGGACGTCGTCTTTGATTACACCGACTAGAGGACTTAAAAGGAAGATTGGTTGTATTGATGTTGCTACTCAGATGGGTAGGAAGAAGAAGATTGATGATGATTATGTTACTGGTGAAGCCATCGGCCAAGGGAAATTTGGATCGGTTTATTTGTGTAGGTCTAGGGGTAGTGGAGCGGAGTCTGCTTGTAAGACTTTGAAAAAGGGGGAGGAGACCGTTCATCGAGAGGTTGAGATAATGCAACATTTGTCTGGGCATTCTGGGGTTGTGACGTTGCAGGCGGTTTATGAAGAAGCTGAATGCTTTCATCTTGTGATGGAATTGTGCTCCGGGGGACGGTTGATTGATCAAATGCTTAAGGAGGGTCCGTTTTCGGAGCAGCGGGCTGCGAACACACTCAAGGAAGTGATGTTGGTCATCAAGTACTGTCATGATATGGGAGTTGTGCATAGAGATATCAAACCTGAGAATATTCTGCTCACAAAATTGGGAAAATTAAAGCTTGCAGATTTTGGACTCGCCATGAGAATTTCCGAAGGTCAAAACTTGACGGGATTGGCTGGAAGCCCTGCATATGTTGCCCCTGAAGTATTGTCGGGCAAATACTCTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCATGCATGCTCTGTTGGTTGGCTCCCTTCCATTTAAGGGAGATTCATTGGAAGCTGTTTTTGAGGCTATTAAGACCGTCAAATTAGATTTCCAAGCAGGGATGTGGGAATCAATATCTAAACCTGCAAGAGATCTTATAGGGAGAATGCTGACAAGGGATACTTCGGCCAGGATATCAGCTGATGAAGTACTTAGGCATCCATGGATTTTGTTCTACACCGCCCAATCAATGAAGATGCTGCCCATCAAAATAAAATTGAAGAATCAAACTGGTGCCGCAAGCAGACAGCTCGTTGCCTCACCGGAACCTAGGTTAGGAAGAAACATGATAGATAATGGCTCAGTTAGCGAGCTTCCATCATCTGAAAGTTGCTATTCCGACGATCAGGATGAATGTGCGTTGATTGATGCACTTGCCACTGCAATTTCACATGTGAGGATATCTGAACCAAAGAGGACCAGATTGTGTAGTCCTACTGGCCCCATAGTTCAGCAAGGTTCATCTAACATGAAGGCTAACAACCTCTGTAAAGCGTTTTGA 1413 0.4395 MRKKRKGSETDASTDLGVVNLDLDHAGSVGSSNLKSHYSLEDCCRLKKRCKEDADIHIEFEGSFKSRLAGIATAPPFGTSSLITPTRGLKRKIGCIDVATQMGRKKKIDDDYVTGEAIGQGKFGSVYLCRSRGSGAESACKTLKKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAECFHLVMELCSGGRLIDQMLKEGPFSEQRAANTLKEVMLVIKYCHDMGVVHRDIKPENILLTKLGKLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLSGKYSEKVDIWSAGVLMHALLVGSLPFKGDSLEAVFEAIKTVKLDFQAGMWESISKPARDLIGRMLTRDTSARISADEVLRHPWILFYTAQSMKMLPIKIKLKNQTGAASRQLVASPEPRLGRNMIDNGSVSELPSSESCYSDDQDECALIDALATAISHVRISEPKRTRLCSPTGPIVQQGSSNMKANNLCKAF* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3540 470 CDD STKc_CAMK 111 359 - -
Mtr3g3540 470 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 27 462 - -
Mtr3g3540 470 SUPERFAMILY Protein kinase-like (PK-like) 103 377 IPR011009 -
Mtr3g3540 470 Gene3D Transferase(Phosphotransferase) domain 1 103 400 - -
Mtr3g3540 470 Pfam Protein kinase domain 112 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3540 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Mtr3g3540 470 ProSiteProfiles Protein kinase domain profile. 112 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3540 470 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 462 - -
Mtr3g3540 470 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Mtr3g3540 470 SMART serkin_6 112 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3540 Mtr-Chr3 49200331 49204650 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3540 104 360 EF-hand Containing Proteins AT4G35310 43.071 1.53e-75 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mtr3g3540 Pkinase 3.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3540 - - mtr:MTR_3g099767 934.095