Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3531 ATGAACACTTTACCACTCAATTTTCACTTCAATTCCAATCATGCCCTTCTCTACCTCCTCCTCCTCCTCTTCATCCTCCTTTCTCCGCAACCTTCAACGGCGCAGATTCCGAATTCATTGCCACCACCACCACCACCACCAGACAAAATCACCACTCTCAAATTCGACAAATCCATGGCAATTGTGCTTATCATCTTAATCGGCGTGTTTCTCATCCTCGGTTTTCTCTCAGTCTACACACGCCAGTGCGCTGAACAGAGAATGAGAGGAAGATTCGATTTATCTATTCCGATCGCCGGAAGTCACCGGAGACACCGTGGACTTGAGACGGAAATCATTGAAACGTTTCCGACTTTTGTTTACTCCACCGTGAAAGGACTCAAAATAGGAAGAGCTGCACTAGAATGCGCCGTGTGCTTAAACGAGTTTCAAGACGATGAAACGCTGCGTTTGATTCCGAATTGTAGCCACGTGTTTCATTCTCAATGTGTCGATGCTTGGCTTGTTAATCACTCCACGTGTCCCGTTTGTCGGGCTAATTTGATTCCAAGACCCGGTGATACTTCTTTCGCTTCAATCCAAATACTGGATTCAAGTTTATCCGATTCAGATGACCCGACCCGAATTAGTCCTATTAGAGGTCCAGGTATTGCAGTTACGTCTCGTTCTCCATCTCCAAAGGTGAATTATTCAGTTACACCGAACCGGGCTCGACCGGTTCGATCAAGTTCAACAGGGTTTAAAATTGGCAACTGGGTTCCGTTTGCACGCTCACATTCAACAGGTCATTCACTGGTTCAAGAAGGAGAGAATCACGAGCGGTTCACTTTGAGATTACCGGAGGAAGTGCGGAACCGGTTGGTGGGTTCAACTCCAAGCCGGGTTACGAGTTGTGGTGTTACTTTTACTCGAGAGGGTAGTGGGAGGAGGGGATATAGAACGAGAAGTGTGGGAAGTAGTGGTAATGCGAGGAGCTATGATTGGTTTAACCGGCCGGACCGGAGGGGATTCTCTTGGACTCCACCGTTTATGGGTCGAACCGGTTCGAGTTGGTCGAAGAATAAGTCACCTGGGAAAATGGATGATGTTGGAGAACGGTCTTCTGATCGGTTGTTTGAAGGTAATCGGGGTTAG 1134 0.4762 MNTLPLNFHFNSNHALLYLLLLLFILLSPQPSTAQIPNSLPPPPPPPDKITTLKFDKSMAIVLIILIGVFLILGFLSVYTRQCAEQRMRGRFDLSIPIAGSHRRHRGLETEIIETFPTFVYSTVKGLKIGRAALECAVCLNEFQDDETLRLIPNCSHVFHSQCVDAWLVNHSTCPVCRANLIPRPGDTSFASIQILDSSLSDSDDPTRISPIRGPGIAVTSRSPSPKVNYSVTPNRARPVRSSSTGFKIGNWVPFARSHSTGHSLVQEGENHERFTLRLPEEVRNRLVGSTPSRVTSCGVTFTREGSGRRGYRTRSVGSSGNARSYDWFNRPDRRGFSWTPPFMGRTGSSWSKNKSPGKMDDVGERSSDRLFEGNRG* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3531 377 PANTHER RING FINGER DOMAIN-CONTAINING 16 304 - -
Mtr3g3531 377 MobiDBLite consensus disorder prediction 358 377 - -
Mtr3g3531 377 MobiDBLite consensus disorder prediction 199 243 - -
Mtr3g3531 377 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Mtr3g3531 377 SMART ring_2 136 177 IPR001841 -
Mtr3g3531 377 MobiDBLite consensus disorder prediction 222 243 - -
Mtr3g3531 377 PANTHER RING-H2 FINGER PROTEIN ATL11 16 304 - -
Mtr3g3531 377 CDD RING-H2_PA-TM-RING 135 178 - -
Mtr3g3531 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
Mtr3g3531 377 MobiDBLite consensus disorder prediction 304 323 - -
Mtr3g3531 377 MobiDBLite consensus disorder prediction 339 377 - -
Mtr3g3531 377 SUPERFAMILY RING/U-box 135 187 - -
Mtr3g3531 377 Pfam Ring finger domain 135 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3531 Mtr-Chr3 49139937 49141605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3531 11 347 Rapid Response to Elicitors AT3G05200 37.465 8.25e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3531 K10664 - gmx:100815982 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2199 5 28663762 28665196 Mtr3g3531 3 49139937 49141605 PCT