Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3529 ATGGCTCTTGAAACTGTGGTTTTCCCACAACAAGATCCATTCACATATAGTTACAAAGACAATTACTTCAACTCTTTGAATAATGACTATGATCATCTTCATGCGGAAGAACAAGAGAATGTTCTCCTAGGAATCATCAACAATGAACAACAAAATCTCCATGCAAACTGGGATCATCAATGGGAATATTCACACTCTTCCTCTCCTGAAATCTGCACCGTTGATCAAACTATCACAGCACCTCCTTCTTCCACCATGGAGGAAGCTACAGTAACAGCATCGTGTAGGAGAAAGCGTCGTCGTATCAAGAGTGCAAAGAACAAAGAGGAGATTGAAAATCAAAGGATGACTCATATTACTGTTGAACGCAATCGAAGAAAACAAATGAATGAGTACTTGAATGTGCTTCGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCTATTATTGGAGGAGCAATAAACTTTGTGAAGGAGTTAGAGCAACATTTACAGTCTATGGGGGGCCAAAAGAAAACGAAAGAACCAAACGAGAACATAGGCTTAAATAATGGACCACCTTTTGCTGAATTCTTCACTTTTCCTCAGTACACAACAAGTGCAACTCAGAACAACAACAACAACAACAACGTCACAATGGAACAACACAATTACCAAGAACAGAAACAATGGGCTGTTGCAGACATTGAAGTTACAATGGTAGATAGTCATGCCAACATGAAAATTCTATCCAAGAAAAAACCAGGACAACTTATGAAGATTGTTGTTGGGTTACAAAATCTTAGGCTTACCATTCTTCATCTTAATGTTACCACGGTCGATGATATGGTTCTTTACTCAGTTAGTATCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCTGCTGTGAATCGACTATTAAGGACGGTCCAACAAGAACTGGCTTATCAACTAAATTGA 966 0.3934 MALETVVFPQQDPFTYSYKDNYFNSLNNDYDHLHAEEQENVLLGIINNEQQNLHANWDHQWEYSHSSSPEICTVDQTITAPPSSTMEEATVTASCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQHLQSMGGQKKTKEPNENIGLNNGPPFAEFFTFPQYTTSATQNNNNNNNVTMEQHNYQEQKQWAVADIEVTMVDSHANMKILSKKKPGQLMKIVVGLQNLRLTILHLNVTTVDDMVLYSVSIKVEEGSQLNSVDEIAAAVNRLLRTVQQELAYQLN* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3529 321 Gene3D - 103 181 IPR036638 GO:0046983
Mtr3g3529 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 177 IPR036638 GO:0046983
Mtr3g3529 321 SMART finulus 119 170 IPR011598 GO:0046983
Mtr3g3529 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 164 IPR011598 GO:0046983
Mtr3g3529 321 PANTHER MAX DIMERIZATION, MAD 1 316 - -
Mtr3g3529 321 Pfam Helix-loop-helix DNA-binding domain 114 165 IPR011598 GO:0046983
Mtr3g3529 321 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 316 - -
Mtr3g3529 321 CDD bHLH_AtFAMA_like 116 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3529 Mtr-Chr3 49124103 49126525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3529 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.115 1.45e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g3529 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3529 - - gmx:100805420 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3529 3 49124103 49126525 Mtr3g3529 3 49124103 49126525 ECH
Mtr5g2197 5 28642992 28645357 Mtr3g3529 3 49124103 49126525 PCT