Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3527 ATGGCAATACTACGTACTACTCTTCCATGTCCAACTCAATTATCCTCCACAAAACACCATGTAATAATAACAAACTCTTTCGACTTTGACAAGAAGAAACATTATTCCCCTGATCCTTTCTTTTCTTCTTCTCTTCGTTTATCTGTTACTCATACCCCAACCCTTATTATCACAACCAAACAACACTTTAATTCTACTCTCAGATTCGCCTCTACTTCCGAACAACAAGTAACCACCCAGGAACAAACGGAAGAGTTGTCTACTACCAGGTTACTTGCTCAGAATGTTCCATGGTCAAGTACCACCGAAGATGTTCGTTCTTTGTTTGAAAAATATGGAAAAGTCCTCCATGTTGAGCTTTCAATGTATAATAAGAACAGAAACAGAGGTTTAGCTTTTGTGGAAATGGGTTCTCCTGAAGAAGCTTCTGAGGCTCTTAATAGTCTCCAATCATATGAGTTTGACGGCCGCATAATAAATATCCAATATGCTAAGCCTAAAAAGGAGAAAATACCGCCACCAGTGGAACGGAAACCAATAACATATAACTTGTTTGTTGCAAACTTTCCTTATGAAGCAAGGTCTAAAGACGTCAAGGAGTTTTTTGATTCAGGAACTGGTAAAGTTGTTTCTGCAGAGGTTATATTTCATGAGAATCCTCGACGACCATCTGGTTATGGATTTGTCTCCTACAAGTCTAAGAAAGAAGCTGATGAAGCTCTTGCCGAGTTTCAAGGAAAGAATTTTATGGGAAGGCCACTAAGGGTGGCACCTAGTAAGCGGTTTGTTCAACTGGCGGAGGAGAGTGCAGGGTCTGAAGATACATCTTCTGAGTTGAGCGTCAATGAGGCAGAAGCCGACAAAACTGATTGA 873 0.4032 MAILRTTLPCPTQLSSTKHHVIITNSFDFDKKKHYSPDPFFSSSLRLSVTHTPTLIITTKQHFNSTLRFASTSEQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRVAPSKRFVQLAEESAGSEDTSSELSVNEAEADKTD* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3527 290 SUPERFAMILY RNA-binding domain, RBD 81 174 IPR035979 GO:0003676
Mtr3g3527 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Mtr3g3527 290 Gene3D - 171 264 IPR012677 -
Mtr3g3527 290 Gene3D - 59 170 IPR012677 -
Mtr3g3527 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 159 IPR000504 GO:0003723
Mtr3g3527 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 255 IPR000504 GO:0003723
Mtr3g3527 290 SUPERFAMILY RNA-binding domain, RBD 172 262 IPR035979 GO:0003676
Mtr3g3527 290 SMART rrm1_1 183 257 IPR000504 GO:0003723
Mtr3g3527 290 SMART rrm1_1 90 162 IPR000504 GO:0003723
Mtr3g3527 290 PANTHER OS08G0483200 PROTEIN 1 289 - -
Mtr3g3527 290 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 289 - -
Mtr3g3527 290 MobiDBLite consensus disorder prediction 265 290 - -
Mtr3g3527 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Mtr3g3527 290 CDD RRM_SF 95 162 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3527 88 261 Eukaryotic Initiation Factors Gene Family AT3G16380 27.957 1.79e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3527 - - gmx:100790439 315.079