Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3515 ATGGATTCTCAACAAGCTCACACTCACATTCAGAGAGATCGCAGAATAGACGCTCTTGGCGATCTTCGAGTTCTTCCCGATGAAATCCTCTGCTCAATTCTCGAACGACTCACTCCTCAAGATGCTGCTCGCGTTGCTTGCGTTAGCAGTGTGATGTATATACTATCCAACGAAGAACCACTATGGATGACTCTATGCCTAAGAGGAGCATCTGGTTTTCTTCAATACAAAGGCTCTTGGAAGAAAACTGCTCTCAATAATTTGAATCTTTCGGAGAAGTACAAAGAGTGCCATAGACAGCAGCCTTTACATTTTGATGGATTCAACTCTTTGTTTTTGTATCGGAGATTATACCGGTGTCATACCACATTGGATACATTTTATACAGAGGGTGGTAATGTGGAAAGAATAAATGACATCTCATTGAAGGACTTCAGCAACAAGTATGACATGAAGAAACCGGTCATGCTTAATGGACTGGCGGATGCATGGCCTGCCAGGCAGAAATGGACAACTGATCAGCTGCTACAAAACTATGGAGACGTTGCATTTAAAATTTCTCAAAGGAGTTCCAAAAAGGTCTCCATGAAGTTCAAGGATTATGTCTCATACATGGAAGTTCAACACGATGAAGACCCATTGTATATTTTTGACGAAAAGTTTGGCGAACATGCCCCTAGCTTATTGAAGGATTACTGTGTACCTCATCTTTTTCAAGAAGACCTCTTTGATATCTTAGATACAGATAAACGACCATCCTATAGGTGGCTTATAATTGGACCACAGAGATCTGGTGCGTCTTGGCATGTTGATCCAGCTCTTACAAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCTGGAAAAGTGCCTTTAGGTGTGACGGTACATGTTAATGAAGAAGATGGCGATGTCAGTATTGAGACTCCTTCATCACTGCAGTGGTGGTTAGATTTTTATCCTCTTCTTGCTGACGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCGAGTGGATGGTGGCACTGCATTTTAAATTTGGAAACAACTATTGCAGTCACGCAGAATTTTGTGAATTCTAATAACTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTCTGCCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGATTATGAAAATGTCATACAGAACATGTCATGTAATGAAGAAAACTTAAGTTACTCTGATTTGTCAAGGAAAGAGAAAAGATCCAAAACTCTGAAAGATGTAGATGATCTATGTTTAGAAAGAAATATAAGTGGTGCGTCCAGAAGCTATAATTTATGGAAAGGTGGATTTTCTTATGATATAAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTACAATTTTGAGTGGAGCTCGGGCAACAGCATTGGTCAACGGGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCAGATATGAGAGATCTAATATGGAAGGGAGCATGTATTGCACTAAATGCCGGCAAGTGGGTAGAATGCCTGTCAAAAATTTGTGCCTTCAACAACTTGCCCCCTCCCACAGATGACGAAAGGCTTCCTGTTGGTTCGGGTAGCAATCCTGTTTATCTAGTGGGGAACTATGTTGTTAAGATTTTTGTCGAAGAAGGACTGGAAGCATCGCTTTATGGTTTAGGCACAGAGTTAGAGTTTTATAGTCTGCTGCTTGAAGCCAACTCCCCTCTCAGGAAACATATTCCTAGTGTTATGGCCAGTGGGGTTGTTTATCTTGAAGACGGATCCTATACCAATTTAAGTTGGGATGGAAAAGGAGTTCCCAGTGTCATTTTGAAGAGCAATATTATCACAGAGAAATGCAATGTGGATGGTTTCCCGTTTGGGGTATGGGGCAAGCAATTGTTTGAGTATAGGAATGCTGGGGTTCCGGTGGACGGATCAGTTAGTTTAGCTGGTAACTCAAGTTTATGGCCATATTTGATAATTAAGCGATGCGAAGGGAATATGTTTGCAGACTTAAGAGACAGACTATCGTGGGAAGATAAAACAAACTTGGCCTCCTTCCTGGGGGAGCAAATGCGCCACCTTCATCTTTTGCCACATCCACCTTTAAATAATTCATTTATATCTGATATTGAACGTGAATTAAACTGGTCTGAGGTGAATGGTTGCATTGCAAATGTTAATTGTAAATCAAACAATGCAGCAGAATGGGGAATCTTCACCAGAATCTTAAAAAAGAAGAGGAAGGATGTCTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATTGAGAAAATCGATGTATATCTACCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGTGGCGCTTCTAAACAATGCTCTTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCATCATCAATTTGCTCTACCTCCAGTGGGAATACAGAAGATGCTGCCGAGGGGGACAATGGTTTATTGAGTGACCACGTTGGAGTGAAATCCTGGTGCCCTAGTTACCTCCTTGATTTCAGTGATCTTTCTCTGGGTGATCCTATTTTTGACTTGATACCAATTTATTTGGATGTGTTTAGAGGCGATTCATATCTTCTTAAGCAATTTTTAGAAAGTTACAAACTTCCTTTTTCTGGCAACATATCAAAGTACGAGTCAACAGAGGGTGGTCTAAAGTTTGGTCGACTTTCATATGTTGCTATGTGTTATTGTATTTTGCATGACGATAATGTCTTGGGAGCTATTTTTAGCATATGGGACAAACTGAGATCATCAGAGTCATGGGAAGAAGTTGAGATGACAGTGTGGGGAGAGTTGAACAATTACAAAGGCTTTCTTTGA 2934 0.4029 MDSQQAHTHIQRDRRIDALGDLRVLPDEILCSILERLTPQDAARVACVSSVMYILSNEEPLWMTLCLRGASGFLQYKGSWKKTALNNLNLSEKYKECHRQQPLHFDGFNSLFLYRRLYRCHTTLDTFYTEGGNVERINDISLKDFSNKYDMKKPVMLNGLADAWPARQKWTTDQLLQNYGDVAFKISQRSSKKVSMKFKDYVSYMEVQHDEDPLYIFDEKFGEHAPSLLKDYCVPHLFQEDLFDILDTDKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVSIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEEDDYENVIQNMSCNEENLSYSDLSRKEKRSKTLKDVDDLCLERNISGASRSYNLWKGGFSYDINFLSMFLDKDRDHYNFEWSSGNSIGQRELREWLSKLWIQKPDMRDLIWKGACIALNAGKWVECLSKICAFNNLPPPTDDERLPVGSGSNPVYLVGNYVVKIFVEEGLEASLYGLGTELEFYSLLLEANSPLRKHIPSVMASGVVYLEDGSYTNLSWDGKGVPSVILKSNIITEKCNVDGFPFGVWGKQLFEYRNAGVPVDGSVSLAGNSSLWPYLIIKRCEGNMFADLRDRLSWEDKTNLASFLGEQMRHLHLLPHPPLNNSFISDIERELNWSEVNGCIANVNCKSNNAAEWGIFTRILKKKRKDVSSRLTKWGDPIPSKLIEKIDVYLPSDLSKLLNINENFSSGASKQCSWIHTDIMDDNIYMEPSSICSTSSGNTEDAAEGDNGLLSDHVGVKSWCPSYLLDFSDLSLGDPIFDLIPIYLDVFRGDSYLLKQFLESYKLPFSGNISKYESTEGGLKFGRLSYVAMCYCILHDDNVLGAIFSIWDKLRSSESWEEVEMTVWGELNNYKGFL* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3515 977 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 4 910 - -
Mtr3g3515 977 SMART fbox_2 25 65 IPR001810 GO:0005515
Mtr3g3515 977 Gene3D - 4 96 - -
Mtr3g3515 977 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 4 910 - -
Mtr3g3515 977 SMART cupin_9 218 381 IPR003347 -
Mtr3g3515 977 Pfam F-box-like 24 68 IPR001810 GO:0005515
Mtr3g3515 977 Gene3D Cupin 116 371 - -
Mtr3g3515 977 ProSiteProfiles F-box domain profile. 19 65 IPR001810 GO:0005515
Mtr3g3515 977 SUPERFAMILY F-box domain 15 72 IPR036047 GO:0005515
Mtr3g3515 977 ProSiteProfiles JmjC domain profile. 223 386 IPR003347 -
Mtr3g3515 977 SUPERFAMILY Protein kinase-like (PK-like) 674 907 IPR011009 -
Mtr3g3515 977 Pfam Cupin-like domain 151 373 IPR041667 -
Mtr3g3515 977 SUPERFAMILY Clavaminate synthase-like 124 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3515 Mtr-Chr3 48994067 49004605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3515 11 973 Glycosyltransferase AT1G78280 59.877 0.0 1190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr3g3515 Cupin_8 1.4e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3515 - - mtr:MTR_3g099370 2024.98