Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3508 ATGGAGAACAACAACCAACAACAACAATATCCAACACCTTCACCCACGGCAGTTACACCACCACCATTCCAACATCTTCTCCAACAACAACAACAACAGCTTCAAATGTTCTGGTCCTACCAACGTCAAGAAATCGAACACGTCAATGACTTCAAAAACCATCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCTGATGAAGACGTTCGCATGATTTCTGCAGAAGCACCAATTCTCTTTGCTAAAGCTTGTGAGCTTTTCATTCTTGAACTCACCATTCGTTCTTGGCTTCATGCTGAAGAGAATAAACGACGAACTCTTCAGAAAAATGATATTGCTGCTGCTATTACTAGGACTGATATTTTTGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATTAAAGATGAAGGTGCTGCTGCTATTGTTGGTGCTGCTGCTAGTGGTGTTCCTTATTATTATCCTCCTATGGGACAACCTGCTGGAATGATGATTGGTCGTCCGGCTGTTGATCCCGCTACCGGTGTTTATGTTCAGCCGCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACGGGCGCGGATGATGGTTCTTATGCTGGTGGTGGCGGTGTTGGCAGTGGTCAGCACAATGGCGATGGCCAGAGCAGCTGA 657 0.449 MENNNQQQQYPTPSPTAVTPPPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGAAAIVGAAASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAGGGGVGSGQHNGDGQSS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3508 218 MobiDBLite consensus disorder prediction 191 218 - -
Mtr3g3508 218 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g3508 218 Pfam Core histone H2A/H2B/H3/H4 28 118 IPR007125 GO:0003677
Mtr3g3508 218 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 216 - -
Mtr3g3508 218 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 5 216 - -
Mtr3g3508 218 Gene3D Histone, subunit A 22 133 IPR009072 GO:0046982
Mtr3g3508 218 SUPERFAMILY Histone-fold 21 127 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3508 Mtr-Chr3 48919802 48923181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3508 23 198 CCAAT-HAP5 Transcription Factor Family AT3G48590 85.792 1.60e-102 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mtr3g3508 Histone 1.7e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3508 - - gmx:100818447 329.331