Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3500 ATGGAGTGGAATTTGAAAGCACCTTCTTGGGATTGGGGTATAGAAGAGGCAACATTACCCAACATAGAAACAATGGAAGAATCAAACAGATTTGGAGTTTATAAAATGAAAGGGGAGTTTTCTGTTGATTTGAAGCTTGGTCAGGTTGGGAACTCTGCCACTGATCAATCACCACTTCCTTTGTCTAATGATGCTGTTGTTGTCTCCAAAATTGCAACACCTACTTCTTCATCAGGATCTTCTAAGAGAGCTAGAGCTATGAATAATAATACAACATTGACAGTTTCTTGTCTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCCAAGACTCCAGAGGTTACAATTTGTGGCCTTAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGCAATTTGATGAAAGAAAAAGAAGTTGTAGGAAACGTTTAGATGGACACAACCGAAGGAGAAGAAAACCTCAACCTGAACCTATCACGCGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCTTTTTCAAGTTCTACTACCATGGTGAATTCAACTTGGAGTAGCGGACTCATATCTTCCTGTGAAAGTGGTAGACTTCACATTAACAACCAACACCAGCAAGTTCATGTGGTTGATAAACAAGATCATTTTCTTGGTTCTACTGCAACCACCTACGAAGGGAAACAGCTTCAATTCTTACACAATGACAACAACAATCCCTCACTTCATAATGAAACCGCACCTCTTCTTAGGACAAGTAGCAAAATGTTCTGTGATAGTTTAGCAACTTCAGTACACGAGTCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCGCATACCTGATAATGGTTTGAATCAAATGGTGCAGCAACCTCATTCAATGTCCCATATGCAGCCCTTGGGACTGAGTCTGCATGGTAACAATAGCTTTGAGTCCATGGAAGGAGTGTTGGTCCCAAATGGAAGTGAGAGTGATCATTGTTCCTCGTTGTATAACATGGGTTCTGATGGATCACAAGGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG 1128 0.4122 MEWNLKAPSWDWGIEEATLPNIETMEESNRFGVYKMKGEFSVDLKLGQVGNSATDQSPLPLSNDAVVVSKIATPTSSSGSSKRARAMNNNTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTICGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTTMVNSTWSSGLISSCESGRLHINNQHQQVHVVDKQDHFLGSTATTYEGKQLQFLHNDNNNPSLHNETAPLLRTSSKMFCDSLATSVHESPCALSLLSSSQTRIPDNGLNQMVQQPHSMSHMQPLGLSLHGNNSFESMEGVLVPNGSESDHCSSLYNMGSDGSQGNDAPQLFPYQWE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3500 375 Gene3D - 88 158 IPR036893 GO:0003677|GO:0005634
Mtr3g3500 375 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 9 375 - -
Mtr3g3500 375 MobiDBLite consensus disorder prediction 356 375 - -
Mtr3g3500 375 MobiDBLite consensus disorder prediction 159 183 - -
Mtr3g3500 375 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Mtr3g3500 375 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Mtr3g3500 375 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 375 IPR044817 GO:0003677
Mtr3g3500 375 Pfam SBP domain 97 170 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3500 Mtr-Chr3 48862903 48866603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3500 1 375 SBP-box Gene Family AT5G50670 39.950 2.97e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr3g3500 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3500 - - gmx:100787407 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3415 8 44753838 44758059 Mtr3g3500 3 48862903 48866603 PCT