Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3485 ATGGAAAAGCTGAATTTTGTGAAAAATGGAGTAAGCAAATTGCCTCCTGGTTTTTGTTTTCAGCCAACGGACGAAGAGCTTGTCTTTCATTACTTGAAATGTAAGATCTTCTCTTATCAATTGCCTGCTTCCATTATTCCTGAGATCAATGTCTGCAAGTTTGATCCTTGGGATTTGCCAGGAAATTGTGGTGAGCAAGATAAGTATTTCTTCAGCAGCAAGGAAGCCAAGTATCGAAATAGCAATCGCATGAACAGAACAACCAGCTCTGGTTATTGGAAGGCAACAGGATCAGACAAGAAAGTTAGTGTTTCTTCATCACTAAGTAATGGAATCGCGGGAATAAGAAAAAGTCTTGTATTTTATCAAGGAAAATCTCCAAATGGATCTCGAACTCATTGGATCATGCATGAATATCGCCTAGTTAGCTTAGGAACTACCGCTTGCAATCAGTTGCAGAACTATGCAAACGAGATAGGGAATTGGGTTTTGTGTCGTATATTCACAAAGAAAAGAAGTAATATAGAAAACGGTTACATGATGAAGAGCAATATAGTGATGAATACTAATGTTGAGGTAGCTCAGCCAAGATTCTTTGATTTTATGAGGGTACACAACTTAGCTTCGGACCCTACTACTCATTTTTCTATATCGTCGTCTTGTTCGAGTTCCAGTGAGGTCTCTTCATCAGAAGAACGATGCAGCGATATATATACTGATTTTTAG 726 0.3843 MEKLNFVKNGVSKLPPGFCFQPTDEELVFHYLKCKIFSYQLPASIIPEINVCKFDPWDLPGNCGEQDKYFFSSKEAKYRNSNRMNRTTSSGYWKATGSDKKVSVSSSLSNGIAGIRKSLVFYQGKSPNGSRTHWIMHEYRLVSLGTTACNQLQNYANEIGNWVLCRIFTKKRSNIENGYMMKSNIVMNTNVEVAQPRFFDFMRVHNLASDPTTHFSISSSCSSSSEVSSSEERCSDIYTDF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3485 241 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Mtr3g3485 241 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 239 - -
Mtr3g3485 241 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Mtr3g3485 241 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Mtr3g3485 241 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 239 - -
Mtr3g3485 241 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3485 Mtr-Chr3 48728058 48729345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3485 1 235 NAC Transcription Factor Family AT5G13180 48.438 2.99e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr3g3485 NAM 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3485 - - aprc:113868555 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3398 8 44493630 44495075 Mtr3g3485 3 48728058 48729345 ECH
Mtr3g3485 3 48728058 48729345 Mtr3g3485 3 48728058 48729345 ECH