Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3483 ATGCCAAGAAAGTTTGTGGAGAAATATGGAGAATGCTTACCGAAAACTATATGTGTAAAGACTCCAAATGGTGTAAATTGGAAATTAAATTTGGTAAAAAGTGATGGCAAAATATGGTTTCAAAAGGGATGGAAAGAATTTGCAGAGTATCATTCTCTAGCTCATGGCCATCTCCTGCTTTTTAAATATGAAAGAACTTCCCTTTTTCATGTGCACATCTTTGATAAGAGTGCCTTAGAGATAAATTACCCTTTGACAAGAGTTGAAGATAAAAGGGTCTTCAACTGTCAAGGAAAAAAACCTTCAAATAATGAAGATTGTAGAGCAAGTCAAAAGAGAAAAACTAACTCCTCCTTTGAAATTGGAAGCAGTAGCTGTGTTAATGTTCGGAAATTTCAAAAGGCAGCCGTACATCATATTGACAGAAAGGGTAAAGGAAAACCAGTGATTGTTGATGCTGATAAAGTTACAACACTTGAAAGAGCAAAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGGGTGCATCATACGTTGAGCACCATTTTCTTCTGACTATACCATCTATGTTCGGTAAGAGACACTTTGATTTGAATAAGAAGCGAGGAGATATTCATTTTCAACTGTCAAATGGCAGAGTTTGGCCTGCAAAGTACCGAATCAGGATGTCCCACACAGGACTAAGATTTGAACTCTCAAGTGGATGGAAGACATTCGCAAAAGACAATAACTTGAAAGTTGGCGATGCTTGCAACTTTGAGCTCATTCTTAGTACTAATATGACTTTCCAAGTTCATATCTTCAGGGAGACAGATAAAGACAACACAAATTGTTCAACATCTCAAAGTAGGATTAATTGGTGTTTAATTTTCTTTCCAATTCCTTTTCTCATATGA 903 0.3599 MPRKFVEKYGECLPKTICVKTPNGVNWKLNLVKSDGKIWFQKGWKEFAEYHSLAHGHLLLFKYERTSLFHVHIFDKSALEINYPLTRVEDKRVFNCQGKKPSNNEDCRASQKRKTNSSFEIGSSSCVNVRKFQKAAVHHIDRKGKGKPVIVDADKVTTLERAKSFKTCNPSFVVVMGASYVEHHFLLTIPSMFGKRHFDLNKKRGDIHFQLSNGRVWPAKYRIRMSHTGLRFELSSGWKTFAKDNNLKVGDACNFELILSTNMTFQVHIFRETDKDNTNCSTSQSRINWCLIFFPIPFLI* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3483 300 ProSiteProfiles B3 DNA-binding domain profile. 1 77 IPR003340 GO:0003677
Mtr3g3483 300 SMART B3_2 2 77 IPR003340 GO:0003677
Mtr3g3483 300 SMART B3_2 172 273 IPR003340 GO:0003677
Mtr3g3483 300 Gene3D - 149 275 IPR015300 -
Mtr3g3483 300 ProSiteProfiles B3 DNA-binding domain profile. 172 273 IPR003340 GO:0003677
Mtr3g3483 300 CDD B3_DNA 170 271 IPR003340 GO:0003677
Mtr3g3483 300 Pfam B3 DNA binding domain 2 76 IPR003340 GO:0003677
Mtr3g3483 300 Pfam B3 DNA binding domain 172 272 IPR003340 GO:0003677
Mtr3g3483 300 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 272 - -
Mtr3g3483 300 SUPERFAMILY DNA-binding pseudobarrel domain 1 84 IPR015300 -
Mtr3g3483 300 SUPERFAMILY DNA-binding pseudobarrel domain 168 273 IPR015300 -
Mtr3g3483 300 Gene3D - 1 78 IPR015300 -
Mtr3g3483 300 CDD B3_DNA 1 75 IPR003340 GO:0003677
Mtr3g3483 300 PANTHER B3 DOMAIN-CONTAINING 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3483 Mtr-Chr3 48722526 48724083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3483 1 274 B3 DNA Binding Superfamily AT3G18990 28.012 4.66e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g3483 B3 4.1e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3483 - - mtr:MTR_7g050580 401.749