Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3479 ATGATGAAGGAATCAACAACAGAAGCAGACCCAATAACTATTTGTCTGAACCTCACCAATTCACTCATAGAAAACGAAATCCCCACCGTCCATCACTTAAAAACCAAATGGTCAATCTTCGGAGTCAAACTAACCCAACTCCAAACCCACCTCACCGATTTCTCCACCGAATATTCCAAATCCTCCACCACCAACCCACTCTCCCTTCACCTCCTCCACTCCGTCCTCCAAACCCTCAACGACGCCGTTTCACTCTCTCACCACTGTCAATCCCAAATTTTACCCCACGGTAAACTCCAAACTCAAAGCCAAATCGATTCACTCATCGCCACTCTCCACCGCCACGTCACTGACTGCGATGTTCTTTTCCGTAGCGGCCTCCTCCTCGAAACCCCCGCTTTCTCTAAACGTGAAGCCGTTCGATCTCTAACGAGAAACCTCATCGCACGGTTGCAAATCGGCTCACCAGAATCACGCGCCACCGCAATCGACTCACTCTTATCTCTTCTCAATCAAGACGACAAAAACGTCACCATAGCCGTCGCACAGGGTGTCGTTCCGGTTCTGGTTCGGTTACTCGATTCCAGCTCTGATATGAAGGAGAAAACAGTTGCTGCTATTTCGAGAGTTTCGACGGTGGAGAGTGGGAAGAATAATTTACTTGCGGAGGGTTTGTTGTTGTTGAATCATTTGGTTAGGGTTTTGGATTCGGGAAGTGGTTTAGCGATAGAGAAAGCTTGTATTGCGCTTCAGGCGTTGAGTTTGAGTAGAGATAATGCTAGAGCGATTGGATCTAGAGGTGGAATTTCGTCTCTGTTAGGGATTTGTCAAGGTGGAACGCCAGGTTCGCAAGGTTATGCGGCCGCGGTTTTGAGGAATCTGGCAAAATTTAATGAAATTAAGGAGAATTTTGTGGAGGAGAATGCGGTTATTGTTTTGTTAGGGCTGGCTTCGTCTGGGACGGGGTTGGCGCGAGAGAATGCCATTGGTTGTGTGGCGAATTTGATTTCGGAGGATGAGAGTATGAGGGTTTTGGCTGTGAAGGAAGGTGGTGTCGAGTGTTTGAAGAATTACTGGGATTCGGTTACGATGATTCAGAGTCTTGAAGTTGGTGTTGAAATGTTGAGGTATTTGGCTATGACTGGTCCAATTGATGAGGTTTTAGTTGGTGAAGGGTTTGTTGGGAGGGTGATTGGAGTGTTGGATTGTGATGTTTTAACGGTGAGGATTGCGGCCGCGAGGGCTGTTTATGCTATGGGTTTGAATGGTGGAAATAAGACGAGAAAGGAAATGGGGGAATGTGGGTGTGTTCCTTCTTTGATTAAGATGTTGGATGGGAAAGGTGTGGAGGAGAAAGAATCTGCTGCAATGGCGTTGTCGGTGTTGTTGCAGCACCCTTTCAATAGGAGGGTCTTTAGAAAGGATGAGAGGGGAATAGTGAGTGCAGTTCATCTATTGAACCCTGCTTTGGTTAATTTGGATAAGAAATACCCTGTTTCGGTTCTGGTTTCACTTTTGCATTCGAAGACTTGTCGGAAACAAATGGTGGCTGCTGGGGCTTGTGTATATATGCAGAAGCTTGTTGAGTTGGATGTTCCGGGTTCAAAGAAATTGTTAGATGGACTTGGTCGTGGTAAGATTTGGGGAGTTTTTGCAAGACCCTAG 1665 0.4661 MMKESTTEADPITICLNLTNSLIENEIPTVHHLKTKWSIFGVKLTQLQTHLTDFSTEYSKSSTTNPLSLHLLHSVLQTLNDAVSLSHHCQSQILPHGKLQTQSQIDSLIATLHRHVTDCDVLFRSGLLLETPAFSKREAVRSLTRNLIARLQIGSPESRATAIDSLLSLLNQDDKNVTIAVAQGVVPVLVRLLDSSSDMKEKTVAAISRVSTVESGKNNLLAEGLLLLNHLVRVLDSGSGLAIEKACIALQALSLSRDNARAIGSRGGISSLLGICQGGTPGSQGYAAAVLRNLAKFNEIKENFVEENAVIVLLGLASSGTGLARENAIGCVANLISEDESMRVLAVKEGGVECLKNYWDSVTMIQSLEVGVEMLRYLAMTGPIDEVLVGEGFVGRVIGVLDCDVLTVRIAAARAVYAMGLNGGNKTRKEMGECGCVPSLIKMLDGKGVEEKESAAMALSVLLQHPFNRRVFRKDERGIVSAVHLLNPALVNLDKKYPVSVLVSLLHSKTCRKQMVAAGACVYMQKLVELDVPGSKKLLDGLGRGKIWGVFARP* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3479 554 SUPERFAMILY ARM repeat 146 496 IPR016024 -
Mtr3g3479 554 Gene3D - 100 228 IPR011989 -
Mtr3g3479 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 552 - -
Mtr3g3479 554 Gene3D - 229 537 IPR011989 -
Mtr3g3479 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 184 225 IPR000225 GO:0005515
Mtr3g3479 554 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 7 552 - -
Mtr3g3479 554 SMART arm_5 424 464 IPR000225 GO:0005515
Mtr3g3479 554 SMART arm_5 297 337 IPR000225 GO:0005515
Mtr3g3479 554 SMART arm_5 256 296 IPR000225 GO:0005515
Mtr3g3479 554 SMART arm_5 173 212 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3479 Mtr-Chr3 48676142 48678373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3479 142 321 U-box Gene Family AT1G23030 31.319 9.30e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3479 - - gmx:100794077 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3479 3 48676142 48678373 Mtr3g3479 3 48676142 48678373 ECH