Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3477 ATGGCAGCTTTTTCATATCAATACCATCCTTTCCTTGTTGACTCATCATTCATGCTCAACATGAACACTGCTTCTCCTCCTCCACCTTCACAGTTTCACCCTCTTCATCAAGATATTATTAACTGTGTTGATCAACAAAGCTCCAAAGTTACTACTACCATAACTGAGAATGAACCTTCTTCTCTTACCAAAAACCTTAGTCCACAGTCTTCCATGGTTCTGGACAAGCTTGAAAATGGTGATGAGCAGGTTACTCAGAAAAATAGTCCTACGGAGAAGAAGAGGAGAACCAGAAACAATACTAACCCTCAATCTCATGATAATGCAGCAGAAGGGAAAAACAAGAAACAGAAGAAAAACAAAGAAGATGAGAAGGCAAAAGCAGAGAAAAAAGATCAGAGAAAGTGTTTGGATGAGCCCCCAACTGGCTATATCCACGTCCGAGCAAGAAGGGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAGCAACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCTCTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTACTTCTGTGAACCCTATGTTCTATGACATGGCAACAGACCTAGACACTCTTTTGGTTAGACAAGAGAAATTAAATAACTTGGCATCACCATCAACATTATCATCTGTGTCACATTGCAATAGTCCTAAACAAGGCACAACTTTTGCTGATACAACAACCATGACTCCAACCAACATCTTCCAAGCTGCTAATGACTACCTTTTGGATACTTCAGCTTCAATTTTTCTACAAGGGCAAAGGTCATCAAATGTTGTCTCTGAGGATGCTAGTCATTTTTGGGAGGTAGAAGATCAGAGACAAAAGTTTCTTCATTCACATGGATTCAACAGCAACTTATGTTCCTTTCATTAA 993 0.3968 MAAFSYQYHPFLVDSSFMLNMNTASPPPPSQFHPLHQDIINCVDQQSSKVTTTITENEPSSLTKNLSPQSSMVLDKLENGDEQVTQKNSPTEKKRRTRNNTNPQSHDNAAEGKNKKQKKNKEDEKAKAEKKDQRKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTLLVRQEKLNNLASPSTLSSVSHCNSPKQGTTFADTTTMTPTNIFQAANDYLLDTSASIFLQGQRSSNVVSEDASHFWEVEDQRQKFLHSHGFNSNLCSFH* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3477 330 Coils Coil 113 134 - -
Mtr3g3477 330 Gene3D - 150 223 IPR036638 GO:0046983
Mtr3g3477 330 SMART finulus 159 209 IPR011598 GO:0046983
Mtr3g3477 330 MobiDBLite consensus disorder prediction 109 143 - -
Mtr3g3477 330 MobiDBLite consensus disorder prediction 87 101 - -
Mtr3g3477 330 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Mtr3g3477 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Mtr3g3477 330 CDD bHLH_AtBPE_like 143 228 - -
Mtr3g3477 330 MobiDBLite consensus disorder prediction 76 143 - -
Mtr3g3477 330 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 330 IPR024097 GO:0006355
Mtr3g3477 330 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 330 - -
Mtr3g3477 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 220 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3477 Mtr-Chr3 48620300 48622871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3477 74 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 50.228 6.38e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g3477 HLH 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3477 - - gmx:100806696 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3477 3 48620300 48622871 Mtr3g3477 3 48620300 48622871 ECH