Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3470 ATGTTGTCCAGAATGAACAGCAACAACAATGGTTGGATGGAAGAAAGAGAAGACGAAAACAACACTACAAACCCAAACACTCCTTCATCTGCTTCACCTGCTTTCATCCATAACCACAACAACAAACAACAAGATTTCTCTTCTTTCATCAAACCCATGCTTGGTGAAATCGATGAAGACGATGAACAATGGTACATCAGAGACATGTCTTTTTCTTCTGCCCCTAACTTAGACAACGTTTTACTTCACACCATCAACGATTCCGTTTCTTCTTCATGTTCACCTTCTTCCTCCGTTTTCAACACCCTTCTTCATCCTGAACCAACACCATCCAATTCCAACCATCTTCAGTACTTTCTTCCTCCTCAAAATCACAAACCCATTAACCCTTTTGACCTTCCTTGTGAACTTGGTTTTCTTGATCATCAAGCTTCAACAATGGCTGCTTCTTCTTTTATGGGTAGTTTCGTTGATTTTGCTTCGAAAACGCCATTAACAGCTACTGCTACTACTACTCAGTTGTTGAGCTTGCCCCATTTGCCTCAAATCAACAATGCCTTCATGGGGTTTCAGAACTCTCAAGAGGGTTCTGGAAAGTCACTGTTTTTGAGACCACTTGATTCTTTACCTTCTTCTGGAACACAACCTACTCTGTTTCAGAAAAGAGCAGCACTGAGAAAAAACATGGGCAAGTGTGAGATTGGTGAAGGTAGTGATAAGAAAAGGAAGTTCAGTGGTGGAGATGAAATTGATGATTTGAGTTTTGATGGGTCTGGTTTGAACTATGATTCTGATGATTTGACTGAGAGTAATGGAAAAAATATTGGAAATGGTTCCAATGGCAATAGCACTGTCACTGATCAGAAAGGGAAGAAGAAAGGAATGCCTGCCAAGAATTTGATGGCCGAACGTCGCCGGAGAAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCCGTTGTTCCAAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAATGAGTTGGAATCAACACCTGCTGGATCTTCACTAACACCTGCTTCAAGCTTACATCCTTTGACACCGACACCATCTTCGTTGCCGGGCCGTATCAAAGAAGAACTATGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGGGAAGGAAGGGCTGTAAATATCCACATGTTTTGTACCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGTTGTTTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGTGCAAAGAAGGTCAAGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCAATGGCATGATCTAA 1455 0.4254 MLSRMNSNNNGWMEEREDENNTTNPNTPSSASPAFIHNHNNKQQDFSSFIKPMLGEIDEDDEQWYIRDMSFSSAPNLDNVLLHTINDSVSSSCSPSSSVFNTLLHPEPTPSNSNHLQYFLPPQNHKPINPFDLPCELGFLDHQASTMAASSFMGSFVDFASKTPLTATATTTQLLSLPHLPQINNAFMGFQNSQEGSGKSLFLRPLDSLPSSGTQPTLFQKRAALRKNMGKCEIGEGSDKKRKFSGGDEIDDLSFDGSGLNYDSDDLTESNGKNIGNGSNGNSTVTDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSLHPLTPTPSSLPGRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCTRKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAECKEGQDVHPEQIKAVLLDSAGFNGMI* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3470 484 Coils Coil 333 357 - -
Mtr3g3470 484 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Mtr3g3470 484 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 361 IPR036638 GO:0046983
Mtr3g3470 484 CDD ACT_UUR-ACR-like 414 473 - -
Mtr3g3470 484 CDD bHLH_AtAMS_like 297 362 - -
Mtr3g3470 484 MobiDBLite consensus disorder prediction 1 38 - -
Mtr3g3470 484 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 101 484 - -
Mtr3g3470 484 Pfam Helix-loop-helix DNA-binding domain 301 343 IPR011598 GO:0046983
Mtr3g3470 484 PANTHER BHLH TRANSCRIPTIONAL FACTOR 101 484 - -
Mtr3g3470 484 MobiDBLite consensus disorder prediction 22 38 - -
Mtr3g3470 484 MobiDBLite consensus disorder prediction 266 289 - -
Mtr3g3470 484 Gene3D - 286 358 IPR036638 GO:0046983
Mtr3g3470 484 SMART finulus 300 349 IPR011598 GO:0046983
Mtr3g3470 484 MobiDBLite consensus disorder prediction 266 296 - -
Mtr3g3470 484 MobiDBLite consensus disorder prediction 355 375 - -
Mtr3g3470 484 MobiDBLite consensus disorder prediction 355 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3470 Mtr-Chr3 48535863 48538810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3470 129 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 58.892 7.29e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g3470 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3470 - - vra:106778861 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3470 3 48535863 48538810 Mtr3g3470 3 48535863 48538810 ECH