Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3469 ATGAATTTCGCACATCTCAACGACTCTCCCATGTTTCGTCAACAGCTTCAGGGTTTGGAAGAAAATGTGGAATCATTACGCTCAAGATGTTGGAAGTTCCACAAAGGATGTAGAAAGTACACGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCATTTGCAACTGCCCTTGAAAATTTTGGAGGAGGCCATAGTGATCCTCTATTTGTAACTTTGGGAGGACCTGTAATGGCCAAATTCTCTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGTTCACAGGTGGAGCATATGCTAAATGACCGGTTAACGAACATCCTTAATGTTGAAATCCTTGATGTCAAGGAAGCTCGGAGGCGTTTTGATAAAGCTTCCCAATTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACCAAGTTTGATGTTGCCGCTGTCATAGAAGAGGAATTGCACAATGCAAGAACAATATTTGAGGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTCATGGACGCTCATCTTCGATACTTTCAACAGGGATATCAGCAGTTACAGGAGCTGGAACCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTTACAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAAGCAAGTTATCAAGAAAGTAGGTTGTCCTTGAATGGACCTTATGGTTCTCCCAGTGGAGAAGTGAATATTCATCCTTTTTCTAGGATATCAAATAGTGTGGTAGATGCAGTAGCTGAATCAGCTGCAAGTGGAAAGGTTCGAGTCATTCGACAGGGATATCTTTCAAAACGTTCATCAAATTTGAGGGCTGACTGGAAGAGAAGGTTTTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTATCGTAAACCATTACATACAAATAGTCTCAATCAGCTATATTCACAGCGGAATTGTGCCAATGAAAACAGTGCAGGCATTCTGAGTAGGTTGCTTTCTTCAGGTTACCCTGGAGTTGTTCCTGATGAAAAATCTGTAGCACGCCACACAGTGAACCTTCTCACATCAACAATCAAGATTGATGCTGAGCAATCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCCTCAAAGATGTATACTTTGCAGGCAGAAAATGCGCTTGACCAGATGGATTGGATGGAAAAGATAAATGGAGTCATTGCCTCCTTATTGTCGGTACAGACACTAGGTGGAAAGTCTTTCTCAGCTGACTCAGAAAGTGGTGACAGCGACTCTTCCAGCATTATCGACTCATTACCAAGTTTACAAGATTATGATCGATTAGGGAGTGGGGATTTTGCATCCAAGAACTCCACCCTTATTAAATCATCTGAAGACTTACAGAAGAATAAGCAGGGTATAAAAGTTGAACAACCAATTGATATTCTAAGAAAGGTTAGCGGTAATGACAAATGTGCCGATTGCGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTCGTATGCATTGAATGTTCCGGCGTTCACCGTAATCTTGGTGTACATAAATCAAAAGTAAGATCACTGAAACTTGATGTCAAAGTGTGGGATTCCTCCGTCTTAACTATGTTTCAGTCACTGGGAAATCTCTTTGCGAATTCGGTTTGGGAGGAGCTTTTGCATGCAACAAGTACTTCACAAACTGATGACACTCCTTTTGGTTCATCCAAAGCTGAAAAAAACAAGTTCGGTCATGCAAAAAAACCAGAACACGATGATCTTATTTCACTAAAGGAAAGATTCATTCATGCAAAGTATTCAGAGAAAGTATTTGTTCGAAGGATGCCAAAAAGCCACCATCTTCTTTCAGTGGGGCAACAAGTGATGGAATGCATCTATGCCAACGACAAGAAAGCAGTGTACCGGCACATTGTCAAATCGGATGTGGACATCAATTCTGTTAGTGGAGAAGCACTATCTGGTTTTTTTTCTCATATATCTTCTTCAAGTGACTCAAATACATCTTCAAGTAAAGTTCAGCTAATGGAGGACATACAAGAGGGTTCTAGTTTGCTTCACTTGGCATGCCTAACAAGTGATGTTGGAATGATCGAGCTTCTCCTACAGTATGGAGCAGATCTAAATGCTATTGATTCAAGAGGTAGGACACCATTGCATTACTGCATTATGAGAGGGAAGACTGCAGCTGCAAAATTGCTTATTACAAGGGGTGCCAATCCACTTGCTGCGGATAATGAAGGCAACACTCCTCTTAAGCTTGCACCAGAACCTGACGATATCGGAAAAATCCATGCCTCATTTCTAGAGAAAATTGAGGACCAACCAACAAGTCATTCGGATGTATAA 2436 0.4105 MNFAHLNDSPMFRQQLQGLEENVESLRSRCWKFHKGCRKYTEGLGEAYDGDIAFATALENFGGGHSDPLFVTLGGPVMAKFSIALREISTHKELLRSQVEHMLNDRLTNILNVEILDVKEARRRFDKASQLYDQAREKFMSLRKSTKFDVAAVIEEELHNARTIFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYQQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKASYQESRLSLNGPYGSPSGEVNIHPFSRISNSVVDAVAESAASGKVRVIRQGYLSKRSSNLRADWKRRFFVLDSRGMLYYYRKPLHTNSLNQLYSQRNCANENSAGILSRLLSSGYPGVVPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQTLGGKSFSADSESGDSDSSSIIDSLPSLQDYDRLGSGDFASKNSTLIKSSEDLQKNKQGIKVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGVHRNLGVHKSKVRSLKLDVKVWDSSVLTMFQSLGNLFANSVWEELLHATSTSQTDDTPFGSSKAEKNKFGHAKKPEHDDLISLKERFIHAKYSEKVFVRRMPKSHHLLSVGQQVMECIYANDKKAVYRHIVKSDVDINSVSGEALSGFFSHISSSSDSNTSSSKVQLMEDIQEGSSLLHLACLTSDVGMIELLLQYGADLNAIDSRGRTPLHYCIMRGKTAAAKLLITRGANPLAADNEGNTPLKLAPEPDDIGKIHASFLEKIEDQPTSHSDV* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3469 811 PRINTS HIV Rev interacting protein signature 509 528 IPR001164 GO:0005096
Mtr3g3469 811 PRINTS HIV Rev interacting protein signature 528 545 IPR001164 GO:0005096
Mtr3g3469 811 PRINTS HIV Rev interacting protein signature 551 572 IPR001164 GO:0005096
Mtr3g3469 811 Pfam Putative GTPase activating protein for Arf 500 636 IPR001164 GO:0005096
Mtr3g3469 811 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Mtr3g3469 811 CDD PH_ACAP 296 432 - -
Mtr3g3469 811 CDD BAR_SFC_plant 15 215 IPR035670 -
Mtr3g3469 811 Gene3D - 667 791 IPR036770 -
Mtr3g3469 811 Gene3D - 286 437 IPR011993 -
Mtr3g3469 811 CDD ArfGap 500 629 - -
Mtr3g3469 811 ProSiteProfiles Ankyrin repeat region circular profile. 710 741 - -
Mtr3g3469 811 SMART arf_gap_3 497 642 IPR001164 GO:0005096
Mtr3g3469 811 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 799 - -
Mtr3g3469 811 SUPERFAMILY BAR/IMD domain-like 6 316 IPR027267 -
Mtr3g3469 811 ProSiteProfiles Ankyrin repeat profile. 710 742 IPR002110 GO:0005515
Mtr3g3469 811 ProSiteProfiles Ankyrin repeat region circular profile. 743 775 - -
Mtr3g3469 811 Pfam PH domain 294 427 IPR001849 -
Mtr3g3469 811 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Mtr3g3469 811 Coils Coil 118 138 - -
Mtr3g3469 811 SMART PH_update 294 430 IPR001849 -
Mtr3g3469 811 Gene3D Arf GTPase activating protein 478 642 IPR038508 -
Mtr3g3469 811 Pfam Ankyrin repeats (many copies) 712 764 IPR002110 GO:0005515
Mtr3g3469 811 ProSiteProfiles Ankyrin repeat profile. 743 775 IPR002110 GO:0005515
Mtr3g3469 811 ProSiteProfiles ARF GTPase-activating proteins domain profile. 497 642 IPR001164 GO:0005096
Mtr3g3469 811 MobiDBLite consensus disorder prediction 588 608 - -
Mtr3g3469 811 PANTHER CENTAURIN/ARF 1 799 IPR045258 GO:0005096
Mtr3g3469 811 SUPERFAMILY PH domain-like 243 427 - -
Mtr3g3469 811 SUPERFAMILY Ankyrin repeat 658 786 IPR036770 -
Mtr3g3469 811 Pfam BAR domain of APPL family 6 233 - -
Mtr3g3469 811 ProSiteProfiles PH domain profile. 293 428 IPR001849 -
Mtr3g3469 811 SUPERFAMILY ArfGap/RecO-like zinc finger 497 638 IPR037278 -
Mtr3g3469 811 SMART ANK_2a 710 739 IPR002110 GO:0005515
Mtr3g3469 811 SMART ANK_2a 743 772 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3469 Mtr-Chr3 48527738 48534132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3469 485 614 C2H2 Transcription Factor Family AT3G07940 41.353 6.07e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3469 K12489 - gmx:100797073 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3469 3 48527738 48534132 Mtr3g3469 3 48527738 48534132 ECH