Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3466 ATGCCTTTTGAAATAATGAACCAGAGGGGTGTTACTGCTTCATCCCATCTTTATGATGATGGTTCCTATGCATCCGAGAGGAGTGTTGGATTAAGGAAGCCAAAATCTATTCATGATGATTATCCACAAGGGAAGAGTGAAATGGCAGCTTCACCTGGAGGCATTTTGCATACTTCATCAGCCCTCGAGAGAAATGCAAAAATAGGCTTGCCAATGTCACAGACTAGTTTATCTGGGGAAGTTATAGAAAACGTACACTTTGGTGCACAAGCTGGCATGGTAGATGCGCTGAAGGATTCAAAGGAATCATTGAATTATCACCCGAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTTTAATTGGGAACAAGATTGTCACCAATGCAGGCGCACGTGAAAGCAGTCTATTCTCAAGCTCACTGTCCGATATGTTTAGCCAAAAGTTGAGGTTCTTGGGAAATGGTGTTCAGTCTGATCAGAATATTACTGCTGGTTCTCTTCCCGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATAGGGGATCTCCTTCCCGACGAAGATGATCTGTTTTCCGGTGTCACCGATGGTTTAGGAGGCAGTGCTCATGCTAGAGCAAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACTTTCAGCTTCAGGAAAAAGAATCAGTGGCTTGGATGGTGATCCTGCTTACTCTGGGGCTTTTAAAGGCAAAAGTTCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTGGAAACATTACTAGCAATGCAGAAGACTCGGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCCTTTATACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTACTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGACATTGAGTTCTAGGAAACTGGATATACGTTATTCAATTCCAAAGGGAAATCCTACAGAGAAGGATATTGGCCATGGTACACTGATGATATCTGGTCTTGATTCAGCTGTTTTGAAAGACGAACTAAAACGTATTTTTGGATTTTATGGAGAAATCAAAGAGATCTATGAATATCCAGAGATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGTGCAGAAGCTTCTCTCCGTTCATTGAATGGAATCTGCCTTGCTGGGAAACACATCAAGCTTGAACCTGGTCATCCTAGGAATGCAATACGTATGACTCAGCCATCTCAAAAGGGACAAGATGAACCTGATCTTGGTCATAATCTCAATGACATCTTATTCTTAAGACAGAAGGCCGGACTATCTTCTGGAGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCAAAGATTCCAATCTGCATCACAGCTGCCTTTGAATGCTTTCTTTGATAACACAAATTTTCACGTGAATTCTAGTATTTCCAACACCACAAGAGGGGCATCTGCTGTAAAAGTATCTGGTGACTCCAGTAATGTTGATGCAATGAAATTTGCATCTATTCCAAGATTGCACCCTCATTCTTTGCCTGAGTATCGTGATGGTTTAGCTAATGGTAGTCCTTACAATTTGTCAAACACCATTAAAATGGCTGTCAACATTGGAACTGGATCCACAGAAGCATCTGATGGCAGGCATATTCAGGGAATGATCTCAACTGGGAACTTGGCAGATTTTAATGCAGGAGGAAATGGGAGCCTTCCCCGTCATCAGCTTTATCATATGTGGAATGGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCTGTGGTTTGGCAGAAAACGCCATCTTTTGTTAATGGCGTTGGTTCTCCTAGTCTTCCTCAGATGCCTAGCTTTGCCAGGACACCGGCTCATATGCTGAGAGCATCACATATAGACCACCATGTTGGATCTGCACCAGTTGTTACGGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCTGATGCTCCTGGGTTTAGATTGGGTTCTCTAGGAAATGCGGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCGGATCTTTCAAGCAACATGTTTTCTCATATTGGTGGGAATGGGAACGATTTGACATCCAATGTTGGGCATGGCTCTCCTAAACAGTTGCCACATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCGAAATTTGATTCTACCAATGAACGAATGAGAAACTTCTATCATCGTAGAAGTGAAGCGAACAATAACAATGCTGATAAAAAACAATTTGAACTTGACCTAGGCCGCATATCGCGTGGGGAAGACAACAGAACAACGCTGATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAGTGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTCATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCAGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTATTCCATACAGATGGTCCAAATGCCGGTGATCCGGAGCCTTTTCCCTTGGGTGCAAATATTAGAGTAAGGCCAGGAAAATTACGTAGTAGTGGCAACGAGGAGAGCCGTAGTCAAGGGAATTCTTCAATTTTGGCAAATGCAGAGGAGTTTGCAAGTGGAGTAGATTCTTCACCAAGTTCTTCAAGAGACACTGACTGA 2910 0.4203 MPFEIMNQRGVTASSHLYDDGSYASERSVGLRKPKSIHDDYPQGKSEMAASPGGILHTSSALERNAKIGLPMSQTSLSGEVIENVHFGAQAGMVDALKDSKESLNYHPRSWSDVHRQPASSSYGLIGNKIVTNAGARESSLFSSSLSDMFSQKLRFLGNGVQSDQNITAGSLPEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDGLGGSAHARASDDFEDFDLFSSGGGMELEGDELSASGKRISGLDGDPAYSGAFKGKSSFGEQSSRTLFVGNITSNAEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDLRAAQNAMKALQNRTLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPGHPRNAIRMTQPSQKGQDEPDLGHNLNDILFLRQKAGLSSGVIASGGSLENGYNQRFQSASQLPLNAFFDNTNFHVNSSISNTTRGASAVKVSGDSSNVDAMKFASIPRLHPHSLPEYRDGLANGSPYNLSNTIKMAVNIGTGSTEASDGRHIQGMISTGNLADFNAGGNGSLPRHQLYHMWNGSNLRQQSPSNAVVWQKTPSFVNGVGSPSLPQMPSFARTPAHMLRASHIDHHVGSAPVVTGSPWERQHSYLGESPDAPGFRLGSLGNAGFHGSWQLHPPDLSSNMFSHIGGNGNDLTSNVGHGSPKQLPHVFPGRLPMTSMSKFDSTNERMRNFYHRRSEANNNNADKKQFELDLGRISRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANIRVRPGKLRSSGNEESRSQGNSSILANAEEFASGVDSSPSSSRDTD* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3466 969 SUPERFAMILY RNA-binding domain, RBD 267 429 IPR035979 GO:0003676
Mtr3g3466 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Mtr3g3466 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Mtr3g3466 969 Gene3D - 237 352 IPR012677 -
Mtr3g3466 969 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 969 - -
Mtr3g3466 969 MobiDBLite consensus disorder prediction 935 969 - -
Mtr3g3466 969 MobiDBLite consensus disorder prediction 905 969 - -
Mtr3g3466 969 CDD RRM3_MEI2_like 796 881 IPR034454 -
Mtr3g3466 969 CDD RRM1_MEI2_like 269 344 IPR034453 -
Mtr3g3466 969 SMART rrm1_1 271 339 IPR000504 GO:0003723
Mtr3g3466 969 SMART rrm1_1 795 873 IPR000504 GO:0003723
Mtr3g3466 969 SMART rrm1_1 356 424 IPR000504 GO:0003723
Mtr3g3466 969 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Mtr3g3466 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Mtr3g3466 969 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 969 - -
Mtr3g3466 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Mtr3g3466 969 Pfam RNA recognition motif 2 793 889 IPR007201 -
Mtr3g3466 969 Gene3D - 353 447 IPR012677 -
Mtr3g3466 969 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3466 Mtr-Chr3 48482107 48489947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3466 265 445 Eukaryotic Initiation Factors Gene Family AT3G16380 23.762 2.74e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3466 - - gmx:100797616 1484.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3380 8 44287210 44294823 Mtr3g3466 3 48482107 48489947 ECH
Mtr3g3466 3 48482107 48489947 Mtr3g3466 3 48482107 48489947 ECH
Mtr8g3380 8 44287210 44294823 Mtr3g3466 3 48482107 48489947 PCT