Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3462 ATGGATCCCGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGTACCGTCCTACCAACAGCTCCACCTCTCCGTCCCCAACTTCTCGACTACGCAGTCACCCCATCAACTGCTCCATCACCTTATTATCCAGCGAGATTACCAAGAGAACTTGGAGGTTTGGAGGAACTTTTCCAAGCTTATGGAATCAGATACTACACGGCGGCGAAGATAGCAGAGCTTGGTTTTACAGTGAGCACGCTGGTGGACATGAAGGATGATGAGCTTGATGACATGATGAACAGCCTTTCCCAGATTTTTCGTTGGGATCTTCTTGTTGGAGAGCGTTACGGCATCAAAGCTGCCATTAGAGCTGAACGGAGACGCCTTGATGAAGAGGAAATTAAACGCCGGGGTCTTCTTTCCGGCGATACCACCAACGCTCTCGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAGCGAGAGAAGGAGGCGGTGGGAAGCGGAGGAGGGAGTACTTGGGAGGTAGCTGTGGTGGAGGAGAGGAGAAAGAGGCAGCAAATAAGGAGGAGAAGGATGAAGATGAAGGGAAATGGTGATCATGGTGAGAATGAAGAAGGAGACGAGGAGGAAGAAGATAACATCAGTGGTGGCGGTGAGAGACAAAGAGAACATCCATTCATTGTGACAGAGCCTGGGGAAGTTGCACGTGGCAAAAAGAACGGTCTAGATTATCTTTTTCATCTCTATGAACAATGTCGTGAGTTCTTGATTCAGGTTCAAGCAATTGCTAAGGAACGCGGTGAGAAATGCCCTACCAAGGTGACAAATCAGGTATTTAGGTATGCAAAGAAAGCTGGAGCAAGCTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGTTATGCATTGCATTGTTTAGATGAAGAGGTATCAAATGAGCTTAGAAGAGGGTTTAAGGAAAGAGGAGAGAATGTTGGTGCATGGAGACAAGCATGTTACAAGCCACTTGTAGCAATAGCTGCACGTCAAGGATGGGATATTGATGCAATATTCAACGCACATCCTCGTCTTTCAATATGGTATGTGCCAACAAAACTTCGTCAGCTTTGTCATGCTGAGAGGAACAGTGCTGCTGCTTCAAGCTCCGTCTCTGTTGGAACTGCTCACCTTCCTTTTTAA 1179 0.4775 MDPDAFTASLFKWDPRTVLPTAPPLRPQLLDYAVTPSTAPSPYYPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDDELDDMMNSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEEIKRRGLLSGDTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVAVVEERRKRQQIRRRRMKMKGNGDHGENEEGDEEEEDNISGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSVGTAHLPF* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3462 392 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 214 378 IPR035209 GO:0003677
Mtr3g3462 392 Pfam Floricaula / Leafy protein SAM domain 51 128 IPR035079 -
Mtr3g3462 392 Gene3D Protein LEAFY 215 384 IPR038276 -
Mtr3g3462 392 MobiDBLite consensus disorder prediction 147 169 - -
Mtr3g3462 392 MobiDBLite consensus disorder prediction 185 225 - -
Mtr3g3462 392 PANTHER PROTEIN LEAFY 1 392 IPR002910 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3462 1 386 Orphan Transcription Factor Family AT5G61850 64.951 1.63e-158 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Mtr3g3462 C_LFY_FLO 1.6e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3462 - - gmx:100798196 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3462 3 48442546 48445144 Mtr3g3462 3 48442546 48445144 ECH