Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3423 ATGGGCAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGTGCTTGGACAAAAGAAGAAGATGAACGTCTCATTAACTACATCAAGCTTCATGGGGAAGGTTGTTGGAGGTCTCTTCCAAAAGCTGCTGGCTTGCTAAGATGTGGCAAGAGTTGCAGATTGAGATGGATAAATTACCTAAGACCTGATCTCAAGAGAGGAAACTTCACTGAACAAGAAGATGATCTTATCATTAACCTCCACAGCCTACTTGGAAACAAATGGTCCTTAATAGCTGCTAGATTACCAGGAAGAACAGATAATGAGATCAAGAATTACTGGAACACTCACATCAAGCGAAAACTCTACAGTCGTGGAGTCGACCCTCAAACTCATCGGTCACTTAACGACTCAACGACATCCACCACCATAATTCCACCAGCTAATGCTGCAGTGTCAATATCTCAAATTCCCACAAGCAACATTAAGAACATGATCATCGACGATATTAGCATTATTAGCCGCAACAAAAACAATTTTCAGTTAGTGAGTGGCTATGCCAATACAAAGATTAATGGAACCAAGTTGGTCTGTGAAGATTCAAATTCAAATAACAGCAGCGGTGTTAGCTCCGAGGAAGCAGGTCATCATCAACTTAATTTGGACCTTTCCATTGGTCTTCCGTCGTCACATCCTCAAATTAACGATGAAAAATTGAAATTACAACAACAACAAGGTGATGATGAGCAACAAGAAACAAAGGTTATTACTAGTCATGGTGTGTGTTTGTGTCGCAATCTAGGGTTTCAAAGCACCCAAGTATGTTGCTGCAACAAAGCCTTAGGTAATACTGTTGCTACAAATGTCACCGATAATAACATTTATAGATTTTACAGACCCATGAATATTTAA 894 0.3993 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDDLIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGVDPQTHRSLNDSTTSTTIIPPANAAVSISQIPTSNIKNMIIDDISIISRNKNNFQLVSGYANTKINGTKLVCEDSNSNNSSGVSSEEAGHHQLNLDLSIGLPSSHPQINDEKLKLQQQQGDDEQQETKVITSHGVCLCRNLGFQSTQVCCCNKALGNTVATNVTDNNIYRFYRPMNI* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3423 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr3g3423 297 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mtr3g3423 297 CDD SANT 69 112 IPR001005 -
Mtr3g3423 297 Gene3D - 14 66 - -
Mtr3g3423 297 Gene3D - 69 137 - -
Mtr3g3423 297 CDD SANT 16 61 IPR001005 -
Mtr3g3423 297 PANTHER TRANSCRIPTION FACTOR MYB7 1 265 - -
Mtr3g3423 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr3g3423 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr3g3423 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr3g3423 297 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Mtr3g3423 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr3g3423 297 SMART sant 13 63 IPR001005 -
Mtr3g3423 297 SMART sant 66 114 IPR001005 -
Mtr3g3423 297 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3423 Mtr-Chr3 48118873 48120918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3423 1 228 MYB Transcription Factor Family AT4G09460 57.826 2.21e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g3423 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3423 K09422 - gmx:100808083 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3423 3 48118873 48120918 Mtr3g3423 3 48118873 48120918 ECH
Mtr8g3352 8 44046587 44048185 Mtr3g3423 3 48118873 48120918 PCT