Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3422 ATGAACAAGACACGCTTTGGATTTTTCTTCATTTTGCTTATTCTCCTTGCTTCTCAGATGATGGTGCAAACTGAAGGAAGACACTGTGAGTCAAAGAGCCATCGATTCAAAGGAATGTGTATGAGTGATCATAACTGTGCTTCAGTTTGTCATGTTGAAGGTTTTCCAGGTGGTAATTGCAGGGGATTCCGTAGACGTTGCTTCTGCAAAAAGCGTTGTTAA 222 0.4099 MNKTRFGFFFILLILLASQMMVQTEGRHCESKSHRFKGMCMSDHNCASVCHVEGFPGGNCRGFRRRCFCKKRC* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3422 73 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952
Mtr3g3422 73 Gene3D - 27 73 IPR036574 -
Mtr3g3422 73 CDD Knot1 40 69 IPR003614 GO:0006952
Mtr3g3422 73 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952
Mtr3g3422 73 PRINTS Purothionin signature 58 72 IPR008176 GO:0006952
Mtr3g3422 73 PANTHER DEFENSIN 1 73 - -
Mtr3g3422 73 SUPERFAMILY Scorpion toxin-like 27 73 IPR036574 -
Mtr3g3422 73 SMART gth_4 28 73 IPR003614 GO:0006952
Mtr3g3422 73 PANTHER DEFENSIN-LIKE PROTEIN 1 1 73 - -
Mtr3g3422 73 Pfam Gamma-thionin family 27 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3422 Mtr-Chr3 48106246 48106790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3422 1 73 Plant Defensins Gene Families AT5G63660 56.164 9.88e-25 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3422 - - pvu:PHAVU_009G158100g 97.0561