Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3413 ATGGCCACGGAACTTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTCAACGGTTACTCCACCATTCTCAACGAACACCAATAACCGCCACTAGTTTCTTCAGTTCCTCATCCAAACCTCGCTTCACCTTTTCCCGCCGCAATTCCTCCGTCTTCTGCCGCGTTGCCAGCACCGACACCGTCTCTAACTTCGACTCCCCTGCTAAAGATGGCCAGGATCGTCTCTCTAAAGTGCCGGTGTCGAATATACGGAACTTTTCCATCATTGCTCATATTGACCATGGGAAGTCCACGTTAGCGGATAAGTTGCTTCAGGTTACTGGTACTGTGCCACAGCGAGAAATGAAGGAACAGTTTCTTGATAATATGGATTTAGAGAGAGAAAGAGGCATCACTATTAAGCTTCAGGCTGCTCGAATGCGTTATGTGTTTGAAAATGAACCATATTGCTTAAATTTGATAGATACTCCTGGACACGTCGACTTCTCCTACGAGGTTTCTCGATCACTCGCTGCGTGTGAGGGTGCTCTCCTTGTAGTAGATGCTTCTCAGGGGGTTGAAGCACAAACACTAGCTAATGTTTATTTAGCTTTGGATAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCAGGTGCAGAACCAGATCGAGTTCTCAAAGAGATTGAAGAGGTTATAGGTCTAGACTGTAGCAATGCCATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATGGACATTCTCAATGCAATTGTTGCAAGAGTTCCCCCACCTTCTGATACATCAAAGAAGCCACTGAGGGCTTTAATATTTGATAGTTACTACGATCCATATAGAGGTGTTATTGTATACTTCCGAGTTGTAGATGGCACAATAAAGAAAGGCGACAGAGTTTATTTTATGGCTAGTGGTAAGGATTATTTTGCCGATGAAATTGGAGTTTTGTCTCCCAATCAACTTCAAGCTGAAGAGTTGTTTGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTGGGTGACACGATCACCCACCATTTTAGAAAGGCAGACAATTTACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCCTGTTTCCTATTGATGCTGACCAATTTCCCGAGCTACGGGATGCACTTGAGAAGCTTCAACTCAATGATGCTGCACTGAAGTTTGAACCTGAAACCTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTCCACATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTGCTAATGGTGATACTGTTGAATGCTCAAATCCATCTTTGCTTCCTGAGCCTGGTATAAGAAGATCAATTGAGGAGCCAGTTGTTAAGATTGAGATGCTTACGCCAAAGGACTATATTGGCCCGCTTATGGAACTGGCTCAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATGAGTGAAATTAGGGCGTCGCTCACCTATGAATTACCACTAGCTGAGATGGTTGGTGATTTCTTTGACCAATTAAAGTCAAGAAGTAAGGGTTACGCTAGTATGGAGTATACTGTTACCGGTTACAAAGAAAGTGATTTAACTAAACTCGACATACAGATAAATGGTGAATGTGTAGAGCCGTTGGCTACAATTGTGCACAGAGATAAGGCGTATTCTGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTCATACCACGGCAAATGTTTAAAATACCAATTCAAGCATGCATAGGAGCTAAAGTGATTGCTAGTGAATCTTTATCTGCAATAAGGAAAGATGTATTAGCCAAATGCTACGGTGGGGACATTACGAGAAAAAAGAAACTGCTTAAGAAACAGGCTGAAGGAAAGAAGAGAATGAAATCAATTGGTAAAGTTGATGTGCCTCAAGAAGCCTTTATGGCAGTTTTGAAACTTGAGAAGGAGGTACTCTGA 2037 0.4266 MATELCGGSLFLSVKTQRLLHHSQRTPITATSFFSSSSKPRFTFSRRNSSVFCRVASTDTVSNFDSPAKDGQDRLSKVPVSNIRNFSIIAHIDHGKSTLADKLLQVTGTVPQREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALDNNLEIIPVLNKIDLPGAEPDRVLKEIEEVIGLDCSNAILCSAKEGIGIMDILNAIVARVPPPSDTSKKPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPNQLQAEELFAGEVGYLSASIRTVADARVGDTITHHFRKADNLLPGYEEATPMVFCGLFPIDADQFPELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCANGDTVECSNPSLLPEPGIRRSIEEPVVKIEMLTPKDYIGPLMELAQERRGQFKEMKFMSEIRASLTYELPLAEMVGDFFDQLKSRSKGYASMEYTVTGYKESDLTKLDIQINGECVEPLATIVHRDKAYSVGRALTLKLKELIPRQMFKIPIQACIGAKVIASESLSAIRKDVLAKCYGGDITRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVL* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3413 678 SUPERFAMILY EF-G C-terminal domain-like 477 571 IPR035647 -
Mtr3g3413 678 Gene3D - 446 557 - -
Mtr3g3413 678 Gene3D Elongation Factor G (Translational Gtpase), domain 3 364 445 - -
Mtr3g3413 678 Pfam GTP-binding protein LepA C-terminus 566 672 IPR013842 -
Mtr3g3413 678 SUPERFAMILY EF-G C-terminal domain-like 370 448 IPR035647 -
Mtr3g3413 678 TIGRFAM lepA: elongation factor 4 82 673 IPR006297 GO:0005525
Mtr3g3413 678 CDD EF4_III 371 446 - -
Mtr3g3413 678 Pfam Elongation factor Tu GTP binding domain 82 259 IPR000795 GO:0003924|GO:0005525
Mtr3g3413 678 SUPERFAMILY Translation proteins 243 355 IPR009000 -
Mtr3g3413 678 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 71 672 - -
Mtr3g3413 678 Pfam Elongation factor G C-terminus 477 563 IPR000640 -
Mtr3g3413 678 CDD LepA 84 261 - -
Mtr3g3413 678 Hamap Elongation factor 4 [lepA]. 78 676 IPR006297 GO:0005525
Mtr3g3413 678 CDD lepA_C 479 558 IPR035654 -
Mtr3g3413 678 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 121 136 IPR031157 -
Mtr3g3413 678 PANTHER TRANSLATION FACTOR GUF1-RELATED 71 672 IPR006297 GO:0005525
Mtr3g3413 678 TIGRFAM small_GTP: small GTP-binding protein domain 84 252 IPR005225 GO:0005525
Mtr3g3413 678 CDD EF4_II 269 354 - -
Mtr3g3413 678 Gene3D - 80 263 IPR027417 -
Mtr3g3413 678 SMART EFG_C_a 476 562 IPR000640 -
Mtr3g3413 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 280 IPR027417 -
Mtr3g3413 678 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Mtr3g3413 678 PRINTS GTP-binding elongation factor signature 128 136 IPR000795 GO:0003924|GO:0005525
Mtr3g3413 678 PRINTS GTP-binding elongation factor signature 152 162 IPR000795 GO:0003924|GO:0005525
Mtr3g3413 678 PRINTS GTP-binding elongation factor signature 168 179 IPR000795 GO:0003924|GO:0005525
Mtr3g3413 678 PRINTS GTP-binding elongation factor signature 204 213 IPR000795 GO:0003924|GO:0005525
Mtr3g3413 678 Pfam Elongation factor Tu domain 2 283 353 IPR004161 GO:0005525
Mtr3g3413 678 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 75 675 IPR027518 -
Mtr3g3413 678 Gene3D Translation factors 264 362 - -
Mtr3g3413 678 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 262 IPR000795 GO:0003924|GO:0005525
Mtr3g3413 678 Gene3D - 558 632 IPR038363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3413 Mtr-Chr3 48024107 48036455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3413 83 316 Eukaryotic Initiation Factors Gene Family AT3G22980 33.198 1.38e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3413 K21594 - gmx:100784073 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3413 3 48024107 48036455 Mtr3g3413 3 48024107 48036455 ECH