Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3397 ATGGCAGACGGTAACCGCTCCAACAGCAACAAGCCAGAGTGGCTTCAACAGTACGATCTGATTGGGAAAATCGGAGAAGGGACCTACGGTCTTGTCTTCCTCGCTCGGATCAAGTCCACCACAAACCGCGGAAAATCCATCGCCATCAAGAAATTCAAACAATCCAAAGACGGCGATGGTGTCTCTCCCACCGCCATCCGTGAAATCATGTTGCTGAGGGAGATAACACATGAAAATGTCGTGAAGCTTGTGAATGTTCACATCAATCATACCGACATGTCTCTCTATCTCGCCTTTGATTATGCTGAACATGACCTTTATGAAATAATAAGACATCATAGAGACAAGGTCAACCAGTCGATTAACCAATACACCGTCAAGTCGATACTGTGGCAGTTGCTGAATGGACTGAACTATCTGCACAGTAATTGGATAGTACATCGAGATTTGAAGCCATCAAATATACTGGTTATGGGCGATGGTGAGGAACACGGAGTTGTTAAAGTTGCTGACTTTGGGCTTGCAAGGATATATCTAGCCCCTCTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTACCGTGCTCCGGAGTTGCTTCTTGGAGCTAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTCCAAGGTGCAGAAGTTAAAGCTACACCAAATCCTTTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGTCATCCCACATTAGAAAAGTGGCCTTCCTTAGCACATCTTCCCCACTGGAACCAAGATACTTCACATATACAAGGACACAAATATGACAATGCTAGTCTCAATAGTGTTGTGCACCTATCTCCAAAAAGTCCTGCATACGACCTTTTGTCAAAGATGCTCGAATATGATCCTAAAAGGCGTATAACAGCAGCACAAGCTATGGAGCATGAGTATTTCAAAATGGAACCACAGCCTGGACGGAATGCACTTGTACCATGCCAACCTGGAGAGGCTTTTGTGAATTATCCCACACGTCCGGTGGACACAACCACAGATTTTGAAGGGACAACCAACATGCAGCAATCACAGCCGGTTTCGTCTGGAGCTGCTATTGCTGGAAACATGCCTGGTGGTCATGCATCAAATAGATCTGTCCCTCGACCAATTAATGTTGGCATGCAAAGAATGCATCAGCTGCAAGCTTATAATCTCACATCCCAGGCAGGGATGAGCAGTGGAATTAATCCTGCTGGCATCCCAATGCAACGAGGTGTTCCACAACAGGCCCATCAGCAGCAACAGTTGAGGAGAAAAGACCCAATGGGAATGCCAGGATATCCTCCACAGCAGAAATCAAGACGTATGTAA 1395 0.4523 MADGNRSNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSTTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSILWQLLNGLNYLHSNWIVHRDLKPSNILVMGDGEEHGVVKVADFGLARIYLAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLAHLPHWNQDTSHIQGHKYDNASLNSVVHLSPKSPAYDLLSKMLEYDPKRRITAAQAMEHEYFKMEPQPGRNALVPCQPGEAFVNYPTRPVDTTTDFEGTTNMQQSQPVSSGAAIAGNMPGGHASNRSVPRPINVGMQRMHQLQAYNLTSQAGMSSGINPAGIPMQRGVPQQAHQQQQLRRKDPMGMPGYPPQQKSRRM* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3397 464 MobiDBLite consensus disorder prediction 375 394 - -
Mtr3g3397 464 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Mtr3g3397 464 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
Mtr3g3397 464 CDD STKc_CDK8_like 17 328 - -
Mtr3g3397 464 Gene3D Transferase(Phosphotransferase) domain 1 101 343 - -
Mtr3g3397 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Mtr3g3397 464 Gene3D Phosphorylase Kinase; domain 1 4 100 - -
Mtr3g3397 464 PANTHER CELL DIVISION PROTEIN KINASE 7 463 - -
Mtr3g3397 464 SMART serkin_6 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3397 464 MobiDBLite consensus disorder prediction 417 464 - -
Mtr3g3397 464 PANTHER CYCLIN-DEPENDENT KINASE E-1 7 463 - -
Mtr3g3397 464 Pfam Protein kinase domain 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g3397 464 ProSiteProfiles Protein kinase domain profile. 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3397 Mtr-Chr3 47837072 47850529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3397 11 464 Core Cell Cycle Gene Families AT5G63610 75.325 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Mtr3g3397 Pkinase 7.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3397 K02208 - gmx:100813433 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3397 3 47837072 47850529 Mtr3g3397 3 47837072 47850529 ECH