Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3394 ATGCAAGGTGAATTAGAATTACCACCTGGTTTCAGATTTCACCCTACTGATGAAGAATTGGTGAATCACTACTTGTGTCGCAAATGTGCTGGTCAATCTATTTCTGTTCCCGTTGTCAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTTACCATAGCGAGAAAGAATGGTATTTTTTCTCTCCAAGGGACAGAAAGTATCCGAACGGTTCGAGGCCAAATCGAGCTGCTGGAAGTGGTTATTGGAAAGCTACTGGAGCTGATAAACCAATTGGGAAATTGAAGCCGATGGGGATTAAAAAGGCGCTAGTATTCTATGCCGGTAAAGCCCCCAAAGGAGTTAAAACTAATTGGATTATGCACGAATATCGTCTTGCCAACGTTGATAGATCAGCCGGAAAGAAAAACAACTTGAGGCTTGATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGCAAGATTGAGAAATTCAATACTAGTAACACGCCAAAGGTTCAAAATTATTATGAACATGAAGAAGTAGAAGAACATGAGATGAAGCCAGAAATTCAAAAGTTGGGGAATTACCAACTGTACATGGACACTTCAGATTCAGTTCCAAAGCTGCACACGGACTCTAGCAGCTCCGGTGGGCACGTGGTTTCACCGGATGTCACGTGCGACAGAGAGGTGCAGAGTGAACCTAAGTGGAATGATCTTGGGATACAGCTGGATGACGCGTTTGATTTTCAGCTCAATTACTTGGAAAATGCTCTTTCATTTGATATTGATGACGACCCCTTTGGGACCAATCAGTACCAAATGAACCAGCTATCGCCGTTACAGGACATGTTCATGTACCCACAAAAGCCATTTTGA 879 0.4232 MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKLKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNTSNTPKVQNYYEHEEVEEHEMKPEIQKLGNYQLYMDTSDSVPKLHTDSSSSGGHVVSPDVTCDREVQSEPKWNDLGIQLDDAFDFQLNYLENALSFDIDDDPFGTNQYQMNQLSPLQDMFMYPQKPF* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3394 292 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Mtr3g3394 292 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Mtr3g3394 292 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 263 - -
Mtr3g3394 292 PANTHER NAC TRANSCRIPTION FACTOR 56 5 263 - -
Mtr3g3394 292 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Mtr3g3394 292 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3394 Mtr-Chr3 47816200 47817832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3394 1 292 NAC Transcription Factor Family AT1G01720 63.000 5.45e-125 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr3g3394 NAM 1.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3394 - - gmx:100779770 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3394 3 47816200 47817832 Mtr3g3394 3 47816200 47817832 ECH
Mtr8g3314 8 43624849 43626637 Mtr3g3394 3 47816200 47817832 ECH