Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3379 ATGATTCGACTCACTCACTGGCTCTTCCATTGCACAACCGTTTGGGCGCCAAAAAGTTACCTCACACCGCGAGTGAAATCAACGCTCACAGTTTTGGAGAAAATGTCTGGAACTGGAAAGGGGAAGAAGAGGGAAGAACTCGACCACGCTTCCGAGGACGATACTGAATCTCACGCGCCTCCCAAAAAGACCGCCAAGAAAGACACTGAAGATGACTCTGGTGACATCGTCTTTGAGATTGGGAAGAACAGGAGGGTTTCCGTCAGGACCTGGAACAAACAGCCTTGGGTTGACATTCGCGAATTTTACACCAAAGATGGCAAGCAGTTGCCTGGCAAAAAAGGTATCTCATTGAACATGGAACAGTGGATTGTGCTTCGTGATCACATTGAAGAAATTGACAATGCAGTCAAAGAGAAATCTTAG 426 0.4695 MIRLTHWLFHCTTVWAPKSYLTPRVKSTLTVLEKMSGTGKGKKREELDHASEDDTESHAPPKKTAKKDTEDDSGDIVFEIGKNRRVSVRTWNKQPWVDIREFYTKDGKQLPGKKGISLNMEQWIVLRDHIEEIDNAVKEKS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3379 141 Pfam Transcriptional Coactivator p15 (PC4) 78 129 IPR003173 GO:0003677|GO:0006355
Mtr3g3379 141 Gene3D Transcriptional Coactivator Pc4; Chain A 67 141 IPR009044 GO:0003677|GO:0006355
Mtr3g3379 141 PANTHER ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR P15 39 140 - -
Mtr3g3379 141 SUPERFAMILY ssDNA-binding transcriptional regulator domain 77 139 IPR009044 GO:0003677|GO:0006355
Mtr3g3379 141 MobiDBLite consensus disorder prediction 34 74 - -
Mtr3g3379 141 MobiDBLite consensus disorder prediction 37 74 - -
Mtr3g3379 141 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 39 140 IPR045125 GO:0003713|GO:0060261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3379 Mtr-Chr3 47694062 47696381 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Mtr3g3379 PC4 1.4e-23 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3379 K25815 - fve:101304416 136.346