Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3361 ATGAACAAAGCTCAAACTGAAATCACTATCCCTCACTTGTTTAGATGCCCTATAAGTCTTGATTTGTTGGAAGATCCAGTGACTTTAACCACTGGCCAAACCTATGATAGATCAAGCATAGAGAAATGGATTTCTGCAGATTCTCAACTCTCAGAAAATCACATGGAATTTGTGGAGATAGCACTTTCTTGCATCCTTAAATTGTTACCTATTGTAAATTTGGAACCTCTAAATATCATCAAAGATGAATCTAAGTTGGAAAGGTTCATATTTTTATTTGAAAAAGGAACTAGTTCAATCAAGACTAGTTTGTGTCTTGTTATAGATCATTCAACAGCAACAGCACAAACAGAAGAGGTTTGTGAAGTACTAGGAAATTCACAAAAACTAGTACATGAAATTGTTCAAGTTGTTTTTAACAAAAACTATGATAAAGTTTCTGAGGCTGCAATTAAGGCCTTATCAGCATTATGTTCATTGGAATCAAACAAAGAGAGTCTAGTGAAAGGAGGAGCAATAAATGGAATCATAACATATATTTCAAGATGTGAAAATAGACAGAAGAATTTGGCTCCACTAGCAATGGCAACAATGAAGAAACTTTTGGTGTTAGAGAGTGGTAAAGAGGCATTGGTGAATCATGTAAATGGTATTGAAACTTTGGTGAAGATGGTTTTCAAGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGAGATACTTTCAATTGTTTGTAGTGATTTTGGGAGTGCTAGAGAGGTAGCTATTGGAGCTGGTGTTTTGAGTCAGTTATTGTTTCTTCTGCAGAGTCAGTGTGGTACCAAAACAAAAACTAAGGCAAGAATGTTGCTCAAGTTGTTGAGATCCAAGTGGAATGAGGAATCAATGCAGCTTTAG 897 0.3567 MNKAQTEITIPHLFRCPISLDLLEDPVTLTTGQTYDRSSIEKWISADSQLSENHMEFVEIALSCILKLLPIVNLEPLNIIKDESKLERFIFLFEKGTSSIKTSLCLVIDHSTATAQTEEVCEVLGNSQKLVHEIVQVVFNKNYDKVSEAAIKALSALCSLESNKESLVKGGAINGIITYISRCENRQKNLAPLAMATMKKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVEILSIVCSDFGSAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWNEESMQL* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3361 298 Pfam U-box domain 10 46 IPR003613 GO:0004842|GO:0016567
Mtr3g3361 298 Gene3D - 111 297 IPR011989 -
Mtr3g3361 298 SUPERFAMILY ARM repeat 50 287 IPR016024 -
Mtr3g3361 298 PANTHER OS02G0542800 PROTEIN 48 290 - -
Mtr3g3361 298 PANTHER OS02G0542800 PROTEIN 9 46 - -
Mtr3g3361 298 SMART Ubox_2 13 68 IPR003613 GO:0004842|GO:0016567
Mtr3g3361 298 CDD RING-Ubox_PUB 14 45 IPR045210 -
Mtr3g3361 298 ProSiteProfiles U-box domain profile. 9 44 IPR003613 GO:0004842|GO:0016567
Mtr3g3361 298 PANTHER WDSAM1 PROTEIN 48 290 IPR045185 GO:0061630
Mtr3g3361 298 PANTHER WDSAM1 PROTEIN 9 46 IPR045185 GO:0061630
Mtr3g3361 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 59 IPR013083 -
Mtr3g3361 298 SUPERFAMILY RING/U-box 6 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3361 Mtr-Chr3 47511070 47512828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3361 10 289 U-box Gene Family AT3G46510 25.000 2.34e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3361 - - mtr:MTR_3g096370 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3361 3 47511070 47512828 Mtr3g3361 3 47511070 47512828 ECH