Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3355 ATGAATCTCTCTTCTCTCAGTTTTACCCCTCATCATCTTGTTGCTCCTATCTATTCTTCACTTCCCACCAAAACTACAAGGGGCAAAAGCGTGGATGGTATTGCAATTGAAGGTCGTAATCTGAATTTCTCGTTCACTGCAAGGCAAACTAAGGATGTGCACGTTCTTAGAGATTGTTCAATTCGCATTCCTTCTGGACAATTTTGGATGCTTCTTGGACCCAATGGCTGTGGAAAATCAACACTCTTGAAGATTTTGGCTGGTCTATTCACTCCAACTTCAGGAACTGTATATGTGAAGGAGCCTAAAAGTTTTGTTTTTCAAAACCCAGATCATCAGGTGGTGATGCCTACAGTAGATTCTGATGTTGCATTTGGTCTTGGTAAAATCAATTTAGCTGACGATGAAGTCAGATCCAGGGTGTCACAAGCTTTACATGCTGTTGGTTTATCTGACTACATGAAGAGATCTGTCCAAACTTTGAGTGGTGGTCAGAAGCAGCGGGTTGCTATTGCTGGTGCTCTGGCAGAAGCTTGTAAGGTTCTGTTGTTGGATGAGCTCACAACATTCCTAGATGAAACTGACCAGGTTGGTGTTATCAAAGCAGTTAGGACTGTCTGGATACTTCCGAAGAAGTTACAGCATTATGGGTTACCCATCGTTTGGAAGAACTAG 675 0.4252 MNLSSLSFTPHHLVAPIYSSLPTKTTRGKSVDGIAIEGRNLNFSFTARQTKDVHVLRDCSIRIPSGQFWMLLGPNGCGKSTLLKILAGLFTPTSGTVYVKEPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLADDEVRSRVSQALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRTVWILPKKLQHYGLPIVWKN* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3355 224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 221 IPR003439 GO:0005524
Mtr3g3355 224 Pfam ABC transporter 56 188 IPR003439 GO:0005524
Mtr3g3355 224 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524
Mtr3g3355 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 205 IPR027417 -
Mtr3g3355 224 CDD ABC_cobalt_CbiO_domain1 37 222 IPR015856 GO:0005524|GO:0016020|GO:0055085
Mtr3g3355 224 Gene3D - 32 211 IPR027417 -
Mtr3g3355 224 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 26 206 - -
Mtr3g3355 224 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 26 206 - -
Mtr3g3355 224 SMART AAA_5 65 221 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3355 Mtr-Chr3 47470584 47474759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3355 30 213 Calmodulin-binding Proteins AT2G36910 30.000 2.79e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3355 - - vra:106780648 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3355 3 47470584 47474759 Mtr3g3355 3 47470584 47474759 ECH