Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3344 ATGGCCGAAACAAAATTGATGATTCCAGGGTTTCGTTTTCACCCCACTGATGTTGAGCTGGTAATGTATTTTCTCAAGAGGAAGATTTTGGGTAGAAAATTCCCTTTTAATGTCATTGATGAACTTGACATTTACAAGTATGCTCCATGGGATCTACCAGAAAAATCTTTGCTCAAGAGTGGTGATTTGCAATGGTACTTCTTTACCCCTGTCGGAAAGAAATATTGCACGGGAGGGAGGATGAATCGGGCAACAGAAGTAGGCTACTGGAAGACTACAGGGAAGGATAGGTCGATTGAACATAGGAATCAAGTGGTGGGGATGATAAGAACCCTGGTGTTTCACACTGGCAAAGCTCCTAAAGGAGACCGAACTGATTGGGTTATGCATGAATACAGACTCGAAAACAAAGACCTAGCTGACAATGGTGTTCCACAGAACTCCTATGTGATTTGTAGGGTATTTCAAAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAGTATGGAAAACCATTTAATGAGAAAGACTGGGATAGCGAAGAGGAAATTGATTATGTACAAGCTGTCCCTGTTGCTGCTGTGTCTGCACCAGCTCTCATTCTACCTAGCTCAAGCCATATTTCTGAAGAAAATGATATGCATACCTCTGCAAGGGGATGCACTGGACAGACCTCTTTATCAGGTCTATCAAGATTGATGCCCTCTGGCACGACACACCCTTCAGCTCCAGGCAATCAAGCTGATGATGACATTTTATCCATGCTTGCTATCTTTGACGATGAAAATGCATTGGCTGGGAATGAAAACAATGGATCTGAGAAGGTTGATAATCCTGGTCAGGCAAACAATGCTGAAGATGTACCTTATTTAATTCCAAATGAGATTTTTGAGGACTTGGGAGATCTCAACAGCTTGGTTGGATTGGATGAAGGAGGCGGTTTTTCCTATGGCCAAAAAGATGAATACGAAAGGCTTTCTACTGGCAACGTCTCTTTGTTTTGCAACCCCCCTGATTTCTTTGAGTTGCTTGACCTAGAGGTGCCATTATCTTGGCAGACTAAACATGATGGCTGA 1074 0.432 MAETKLMIPGFRFHPTDVELVMYFLKRKILGRKFPFNVIDELDIYKYAPWDLPEKSLLKSGDLQWYFFTPVGKKYCTGGRMNRATEVGYWKTTGKDRSIEHRNQVVGMIRTLVFHTGKAPKGDRTDWVMHEYRLENKDLADNGVPQNSYVICRVFQKEGPGPRNGAQYGKPFNEKDWDSEEEIDYVQAVPVAAVSAPALILPSSSHISEENDMHTSARGCTGQTSLSGLSRLMPSGTTHPSAPGNQADDDILSMLAIFDDENALAGNENNGSEKVDNPGQANNAEDVPYLIPNEIFEDLGDLNSLVGLDEGGGFSYGQKDEYERLSTGNVSLFCNPPDFFELLDLEVPLSWQTKHDG* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3344 357 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Mtr3g3344 357 SUPERFAMILY NAC domain 7 157 IPR036093 GO:0003677|GO:0006355
Mtr3g3344 357 MobiDBLite consensus disorder prediction 211 248 - -
Mtr3g3344 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 239 - -
Mtr3g3344 357 Pfam No apical meristem (NAM) protein 9 134 IPR003441 GO:0003677|GO:0006355
Mtr3g3344 357 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Mtr3g3344 357 MobiDBLite consensus disorder prediction 211 244 - -
Mtr3g3344 357 MobiDBLite consensus disorder prediction 264 285 - -
Mtr3g3344 357 PANTHER PLANT NAC DOMAIN PROTEIN 6 239 - -
Mtr3g3344 357 MobiDBLite consensus disorder prediction 265 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3344 Mtr-Chr3 47396421 47401473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3344 1 353 NAC Transcription Factor Family AT5G09330 44.000 9.14e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr3g3344 NAM 4.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3344 - - adu:107470479 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3344 3 47396421 47401473 Mtr3g3344 3 47396421 47401473 ECH
Mtr8g3278 8 43264281 43267422 Mtr3g3344 3 47396421 47401473 PCT