Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3337 ATGAGTGGAACTGGCAGAAAGCACTCTTCAAAGTGGGATTTGAGTGATGAGCACAAATTTTCACCTGGTAGCAAGCAAATGCGGTCTGGACGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCAGAATGGGCTTATTTGGAAGGAAATGATAAATTAAGACCTGTTACGGGATTTTCATCAAAGGAATCTTATTATGGAGGCAGAGGTTCAAATGAGGACGATGCTATGCATAAAGACCATAGAGTTTTTAATTCAAGAAGAGAATGGGACACTGATGGAAGTTACAGCAGGAACATGAGACACAGTCAGTCCCCTAAAAATGATTGGAGCAGGAACAGTCGGAGCCGGAGTCGGAGCCCTCCTCGTGGTTTCAGGTGGGATTCAGGAGTTGATGGTAGAAAAAGGACGAGGGTTGGAGGATCAACACGACCGTGCAGAGATTTTGCTGTTGGAAAATGTAGAAGAGGCAGTCATTGCAATTTTCTGCATCATGATAACCAAAATCGTGAGAATAGTTGGGAAGGTAGGCCCAGGGAAGATGGAGCTCCCAGATACTCTGCTACCCATGAGAGTGTTGACCATTCTCTTAAGAGGGGTAGATCTAATGAAGCTTGTATAAATTTTGCAAAAGGCAGTTGTAGAATGGGAGCATCTTGCAAGTTTGTGCATGATTACGATTCTGATGGATATGGTAAAGTTTCTATGGATGAGTTCACTAGAGAACGGGATGATGAAGCTCTCAGATATCCTGCTACCCATGAGAGCAGGGACCATTCTCTTAAGAGTGGTAGATCTAATGAATTCATTAGAGAAAGGGAAGATGGAGCTCGCAGATATCCTGCTACCCATGAGAGCAGGGACCATTCTCTTAAGAGTGGTAGATCTAATGAATTCACTAGAGAAAGGGAAAATGGAGGTCCCAGATATCCTGCTACCTACGAGAGCAGGGACCATTCTCCTAAGAGTGGTAGATCTAATGAATTCACTAGTGAAAGGGAAGATGGAGCTCCCAGATATCCTACTACCCATGAGAGCAGGGACTATTCTCTTAAGAGTGGTAGATCTAATGAATTCACTAGTGAAAGGGAAGATGGAGCTCCCAGATATCCTACTACCCACGAGAGCAGGGACTATTCTCTTAAGAGCGGTAGATCTAATGATGAATATGGCAAAGTTTTTATGGATGAATTCACTAGAGAAAGAGAAGTTGGCAGAAGGCACAGAGATAATTCTTTTGAGCACGGTGGCCGGCATGTGCCTAACCGCACTATTGATGCTCCTTGCAAATTTTTTGCTAGTGGAAATTGTCGAAATGGTAAACATTGTAGGTTTTCTCACGATACGCAAGCATGTAGGAGCCCTATTAGAAGATTAAGGGATGATAGATGGACAAGAAATCCAAGTAGAGATCATCAAATGTTGGATAGACGAAAATTGAGTGACTCCATCAGTCCAAATAAAAGGCTAAGAGATGATAGGTGGGGTTCAGATAGTGACATGGCTGATCCAGATAGAGTCGAGGACAGTCCAAAGCGGAATGATACAGTTTCTGGCTCTGATGCAGCAAAGCTGATTGAGAATAAAAATGGAAATGTAGGTGCCACAGAGCCAGAATTTACTGATTTGCCTATAACGGATGGATGGGGGCATGGTTTAGATAAGAGCGGGCTGCATGCTAAACCACCAATTTTGAGTGATAAGAAGGAAGCTGATATTTGGATAGCAGAAAATACTGGTGCCAACATGCATGGTTCCCAGTCAATAGGTACAACGGACATTTGGCCGGGTGATGCAGAAATGTCTCCTGATTGGAATTATAGGATGGGATCTTCCAGCCATATGGAAGAACATAAACAGAAGGAACATGATGTAAGCCAGGGTGGTACATATCTAGCTATCTCTGAACACAACGGAATACAACTTGCTCCAGGACAAAACATCAATCAGAATACAGACAATGTAAATCCTTTGCATACTTCCAGCTACCATGCAGTTGGACAAAGTCAAGTGGATGTTCCCATTCTTTCTTCAAGAGAAGGCATTGTTGATGCTATACACAGCCAGGAAGTATCTACTGAGCAAAAGTACACCGGAGAACCAAATATTATGGATTCAGGCTTATCACAAGTTAGTTCAATAAATCCTCCAGTTCAAAACGTAGTAAGCAATGAACAGCTTGCTCAACTCACGAATCTCTCAGCCTCTCTGGCTCATATCCTTGGTGCAGGTCAGCAGCTGCCGCAGCTATATGCTGCTTTAAATTCTCATGAATTGAAGGACAGTCCTTCCCAAGCAAAAACTCAAGTGCCTGCAATGCCTGTTTCAATCACATGCATCAAGCCAGATCCTGCCGTTGAACTCCCAAAACAGTATGATCCAATGAATGATAGTATTGAGCAAAAGAATGCTGATGCAAGTGGTGTACCCCCAGCCATTCCTCCAAGTAAAACTATTGCTGAAGTAGAAATTCTGTCACAGTTGTCTACCCCAGGAAGAGAAAACTTTGGTAATTCAATTAAGGGCGCCTCCTCAGAACATGTCAAGAGTGATAATCTAATCCATTTGCAGCCTGGTCAAAACACGGTGGTCAATAAGGATAACAATGAAGAGGTAGCTAGGGAAAGGAAAAATTCTCAAGATGGTCATAAAAGTACCAAAGAGAACGGTCCTCAAAACATGGACCAAAATGCTGGACCTGATGATGCCAAGCAAACAAAGGAAATGAAAGGATCACGTGCATTTAAATTTGCATTGGCTGAGTTTGTTAAGGAGCTTCTGAAACCAACTTGGAAAGAAGGTAAAATCACTAAAGAAGATTATAAAACTATTGTGAAGAAAGTTGTTGATAAAGTAACGGGTACCATCCAGGAGGCCAATATTCCGCAGACACAAGAAAAAATTGACCAATATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGGGTTAG 2982 0.4245 MSGTGRKHSSKWDLSDEHKFSPGSKQMRSGRSSADVAGSNSSEWAYLEGNDKLRPVTGFSSKESYYGGRGSNEDDAMHKDHRVFNSRREWDTDGSYSRNMRHSQSPKNDWSRNSRSRSRSPPRGFRWDSGVDGRKRTRVGGSTRPCRDFAVGKCRRGSHCNFLHHDNQNRENSWEGRPREDGAPRYSATHESVDHSLKRGRSNEACINFAKGSCRMGASCKFVHDYDSDGYGKVSMDEFTRERDDEALRYPATHESRDHSLKSGRSNEFIREREDGARRYPATHESRDHSLKSGRSNEFTRERENGGPRYPATYESRDHSPKSGRSNEFTSEREDGAPRYPTTHESRDYSLKSGRSNEFTSEREDGAPRYPTTHESRDYSLKSGRSNDEYGKVFMDEFTREREVGRRHRDNSFEHGGRHVPNRTIDAPCKFFASGNCRNGKHCRFSHDTQACRSPIRRLRDDRWTRNPSRDHQMLDRRKLSDSISPNKRLRDDRWGSDSDMADPDRVEDSPKRNDTVSGSDAAKLIENKNGNVGATEPEFTDLPITDGWGHGLDKSGLHAKPPILSDKKEADIWIAENTGANMHGSQSIGTTDIWPGDAEMSPDWNYRMGSSSHMEEHKQKEHDVSQGGTYLAISEHNGIQLAPGQNINQNTDNVNPLHTSSYHAVGQSQVDVPILSSREGIVDAIHSQEVSTEQKYTGEPNIMDSGLSQVSSINPPVQNVVSNEQLAQLTNLSASLAHILGAGQQLPQLYAALNSHELKDSPSQAKTQVPAMPVSITCIKPDPAVELPKQYDPMNDSIEQKNADASGVPPAIPPSKTIAEVEILSQLSTPGRENFGNSIKGASSEHVKSDNLIHLQPGQNTVVNKDNNEEVARERKNSQDGHKSTKENGPQNMDQNAGPDDAKQTKEMKGSRAFKFALAEFVKELLKPTWKEGKITKEDYKTIVKKVVDKVTGTIQEANIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKG* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3337 993 ProSiteProfiles Zinc finger C3H1-type profile. 200 227 IPR000571 GO:0046872
Mtr3g3337 993 MobiDBLite consensus disorder prediction 852 910 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 248 305 - -
Mtr3g3337 993 Gene3D - 422 495 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 128 142 - -
Mtr3g3337 993 ProSiteProfiles Zinc finger C3H1-type profile. 428 450 IPR000571 GO:0046872
Mtr3g3337 993 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 326 991 - -
Mtr3g3337 993 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 244 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 796 815 - -
Mtr3g3337 993 Gene3D - 188 265 - -
Mtr3g3337 993 Gene3D - 132 185 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 161 196 - -
Mtr3g3337 993 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Mtr3g3337 993 SMART c3hfinal6 142 166 IPR000571 GO:0046872
Mtr3g3337 993 SMART c3hfinal6 201 226 IPR000571 GO:0046872
Mtr3g3337 993 SMART c3hfinal6 423 449 IPR000571 GO:0046872
Mtr3g3337 993 MobiDBLite consensus disorder prediction 25 46 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 315 387 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 463 543 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 68 96 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 1 143 - -
Mtr3g3337 993 SUPERFAMILY CCCH zinc finger 426 448 IPR036855 GO:0046872
Mtr3g3337 993 MobiDBLite consensus disorder prediction 868 884 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 9 24 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 885 900 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 463 515 - -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 97 120 - -
Mtr3g3337 993 Pfam CCCH-type zinc finger 428 448 IPR041367 -
Mtr3g3337 993 MobiDBLite consensus disorder prediction 852 867 - -
Mtr3g3337 993 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 244 - -
Mtr3g3337 993 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 326 991 - -
Mtr3g3337 993 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 165 IPR000571 GO:0046872
Mtr3g3337 993 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 204 225 IPR000571 GO:0046872
Mtr3g3337 993 MobiDBLite consensus disorder prediction 248 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3337 Mtr-Chr3 47310200 47319060 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g3337 zf-CCCH 0.00014 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3337 - K22909 gmx:100783856 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3337 3 47310200 47319060 Mtr3g3337 3 47310200 47319060 ECH
Mtr3g3337 3 47310200 47319060 Mtr8g3271 8 43179245 43188339 ECH