Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3336 ATGATCCACAAAAAACACCATTTCTCAATCATAAGATCCACCCTCATCATCCTCCTCTCCATGGCAACCCTCCCATTCCTCTTCTTCATCTTCCTCACCCTCCCTCACTCTCACTCTCACTCCTCCCCAAACCTCAACCTCATCCAACAAGCCTGCAAATCCACCCGCTTCCCTCACCAATGCCAAACCTCCCTCTATTCCCACCCCCACCCAACAAACCCCACCCCCCTTCAAATCATCAACTCCGCCATCTCACTCTCTTATCAAAACCTCAAAACTGCAGAATCATTACTCAACTCCATCCTCCATGCCTCCTCCTCCGTGCACAACCACACGCGCACCACCCTCGCTAAAAGCTGTCTTCAGGTTTTCAAATACTCTCAACACCGTACCTCTCTCACCCTCGAAGCTCTCTCACGTGGTAAAATCAAAGATGCACGTGCTTTCATGACTGCTGCTTTGGCTTATCAGTATAACTGCTGGTCTGGTCTTAAATACGCTAATGATACTGAATTAGTCTTCAAAACCATGTCGTTTCTTGAATCTCTCACCAACCTATCCAGCAATGCGCTTAGCATGATTCTCTCTTATGATCTCTTTGGTAATGATACTGATTCGTGGAGGCCGCCGAGAACAGAACGGGATGGTTTTTGGGAGGATTCTGGGTCGGGTGTGTTTGGTTCTGGACCGTCTGTGCCGGTGGATCTTACACCGAATGTTAGGGTGTGTAAAGAGGCTTACACGGACGCCGGCAGTGGGTGTTATAAGACAGTGCAGGAAGCTGTTGATGCTTCGCTTGATGATTTGCCAGTTGGAGAGAGATTTGTGATACATATAAAGGAAGGGGTTTATGAAGAGAGGGTTAGGGTTCCGTTAAGGAAGAGGAATGTTGTGCTTTTGGGTGATGGCATTGGTAAGACTGTTATTACTGGCTCTTCTAATGTTGGACTACAGGAAGGGATGACAACCTATAACTCTGCCACTGTAGGGGTTGTTGGGGATGGATTCATGGCAAAGGATCTTACTATTCAAAACACAGCAGGTGCGAATGCTCACCAAGCAGTAGCATTCAGATCAGACAGTGATCTTTCTGTTATTGAGAATTGTGAATTAATAGGCAATCAAGATACTCTCTATGCTCATTCCTTGCGGCAGTTTTATAAGTCTTGCCGGATTATAGGCAATGTGGACTTTATTTTTGGAAACTCGGCTTCATTCTTCCAAGACTGTGAAATACTAGTCCAGCCGAGGCAAGCAAGGCCAAAGAAAGGGGAGAACAATGCCATTACTGCACATGGTAGAACAGATCCTGCTCAGTCGACAGGTTTCGTTTTCCACAACTGCTTGGTTAACGGTACCAAGAAATATATAGAGTTGTTTAATGACAATCCTAAAGTACACAAAAACTATCTCGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTTTATTAATTCCTTCTTGGCAGCCATAATCACACCAAAGGGTTGGTTGCCATGGAGTGGAGATTTTGGACTGAGAACACTCTACTATGGGGAATTTGACAACTCTGGACCTGGTTCTAATTTAACTAAGAGAGTGACTTGGAGTAGCCAGGTTCCTGCTGAACATGTGTCCACATATTCAGTACAGGGTTTCATTCAAGGTGATGATTGGGTTCATCGTATCGGTTATTCGCTCATGGATGGATGGGACTAA 1698 0.4541 MIHKKHHFSIIRSTLIILLSMATLPFLFFIFLTLPHSHSHSSPNLNLIQQACKSTRFPHQCQTSLYSHPHPTNPTPLQIINSAISLSYQNLKTAESLLNSILHASSSVHNHTRTTLAKSCLQVFKYSQHRTSLTLEALSRGKIKDARAFMTAALAYQYNCWSGLKYANDTELVFKTMSFLESLTNLSSNALSMILSYDLFGNDTDSWRPPRTERDGFWEDSGSGVFGSGPSVPVDLTPNVRVCKEAYTDAGSGCYKTVQEAVDASLDDLPVGERFVIHIKEGVYEERVRVPLRKRNVVLLGDGIGKTVITGSSNVGLQEGMTTYNSATVGVVGDGFMAKDLTIQNTAGANAHQAVAFRSDSDLSVIENCELIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSASFFQDCEILVQPRQARPKKGENNAITAHGRTDPAQSTGFVFHNCLVNGTKKYIELFNDNPKVHKNYLGRPWKEYSRTVFINSFLAAIITPKGWLPWSGDFGLRTLYYGEFDNSGPGSNLTKRVTWSSQVPAEHVSTYSVQGFIQGDDWVHRIGYSLMDGWD* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3336 565 SUPERFAMILY Pectin lyase-like 250 560 IPR011050 -
Mtr3g3336 565 SMART PMEI_2 43 193 IPR006501 GO:0004857
Mtr3g3336 565 Pfam Pectinesterase 249 550 IPR000070 GO:0030599|GO:0042545
Mtr3g3336 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 194 IPR035513 -
Mtr3g3336 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 196 IPR035513 -
Mtr3g3336 565 PANTHER PECTINESTERASE 13 556 - -
Mtr3g3336 565 CDD PMEI-like_3 51 194 - -
Mtr3g3336 565 Pfam Plant invertase/pectin methylesterase inhibitor 46 193 IPR006501 GO:0004857
Mtr3g3336 565 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 194 IPR006501 GO:0004857
Mtr3g3336 565 Gene3D - 244 563 IPR012334 -
Mtr3g3336 565 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 13 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3336 Mtr-Chr3 47295116 47297783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3336 48 553 Carbohydrate Esterase AT5G09760 63.548 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3336 - - gmx:100802102 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3336 3 47295116 47297783 Mtr3g3336 3 47295116 47297783 ECH
Mtr8g3270 8 43173264 43175979 Mtr3g3336 3 47295116 47297783 PCT