Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3332 ATGGCTCCGGCGACAGCTCCGGCGTCTCCATCGCCATCTTCTATCAAGCTATCAAGCTTAATCCGCCGCACCCATGCACCTCACAAAATTCAAAAGAAGCTTTCATACTCCTCCTCTTCCTCCACCTTCGAGGAGGAGGAGGGGAATAAGTTACTATCGCTTGTTAATATATATAAGAGGGCTGAGTACACGGTGGGTGAGGAGGAGGATTACGGTGACCTCCTGTGTGAGCAATGTGGGTCCGGTGAACAACCGGAGGAGCTGCTTTTGTGTGACAAATGTGACAATGGTTTTCATATGAAATGTGTCAGACCAATTGTTGTTCGAGTTCCGATTGGTCCGTGGATTTGCCCCAAGTGTTCTGATGTGAAGGTCAAGAAACTCAAAAAGCTTTCTCAGAAGAAAATTCTTGATTTCTTCGGGCTTCGTAGGGATTCTCTTTTCGGGAACAATCGTGCTTCTTCTCAGGATGCTATGAAGCGTCGGAGACGTCCAAGACCTCTGGTGGTACAGAAGAAAAGGAGAAGGCTTTTACCATTTGTTCCTACAGAAGATCCTGATAGGAGGCTGAAACAAATGGCTTCCCTTGCTACCGCTTTAACAGCATTGGATATAGAGTTCAGTAATAAGCTGACGTACTTTCCAGGAATGGCTCCTAGATCTGCTAATCGATCCATTTTAGAGAACGGTGGAATGCAGGGTCTTACTAAGGAAGATACGCAGACCTTAAAACGCTGCATAGCTATGACTAAACAAGGCCAATTCCCTCCCTTAATGGTCGTTTATGATTCATGCCAAGGCTATACTGTGGAGGCTGATGGCCCAATCAAAGATATGACATTTATTGCTGAATACACTGGCGATGTTGATTATATAAAGAAGAGAGAATCTGATGATTGTGACAGTATGATGACGCTGCTTATTGCAACAGAAGCTGCTGACAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTCATCAGTGGCATCAACAATCATACTCAGGAAGGCAGGAAGAAGCAGAACTGTAAATGTGTGAGATATGATGTTAAAGGTGAAAGCCGGGTCTTATTGGTTGCTACTCGAGATATTTCCAAGGGGGAGAGGCTTTATTATGACTATAATGGTTATGTGCATGAATACCCAACTCATCATTTTGTCTGA 1173 0.4433 MAPATAPASPSPSSIKLSSLIRRTHAPHKIQKKLSYSSSSSTFEEEEGNKLLSLVNIYKRAEYTVGEEEDYGDLLCEQCGSGEQPEELLLCDKCDNGFHMKCVRPIVVRVPIGPWICPKCSDVKVKKLKKLSQKKILDFFGLRRDSLFGNNRASSQDAMKRRRRPRPLVVQKKRRRLLPFVPTEDPDRRLKQMASLATALTALDIEFSNKLTYFPGMAPRSANRSILENGGMQGLTKEDTQTLKRCIAMTKQGQFPPLMVVYDSCQGYTVEADGPIKDMTFIAEYTGDVDYIKKRESDDCDSMMTLLIATEAADSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYDVKGESRVLLVATRDISKGERLYYDYNGYVHEYPTHHFV* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3332 390 ProSitePatterns Zinc finger PHD-type signature. 76 120 IPR019786 -
Mtr3g3332 390 ProSiteProfiles SET domain profile. 256 378 IPR001214 GO:0005515
Mtr3g3332 390 CDD SET_ATXR5_6-like 253 390 - -
Mtr3g3332 390 CDD PHD_RSF1 75 120 - -
Mtr3g3332 390 Pfam SET domain 303 378 IPR001214 GO:0005515
Mtr3g3332 390 Pfam PHD-finger 76 121 IPR019787 -
Mtr3g3332 390 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 31 388 - -
Mtr3g3332 390 PANTHER HISTONE ACETYLTRANSFERASE 31 388 - -
Mtr3g3332 390 ProSiteProfiles Zinc finger PHD-type profile. 73 123 IPR019787 -
Mtr3g3332 390 SUPERFAMILY SET domain 249 378 IPR046341 -
Mtr3g3332 390 SMART PHD_3 75 121 IPR001965 -
Mtr3g3332 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 135 IPR013083 -
Mtr3g3332 390 SUPERFAMILY FYVE/PHD zinc finger 62 127 IPR011011 -
Mtr3g3332 390 Gene3D SET domain 162 390 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3332 Mtr-Chr3 47261002 47265163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3332 71 137 C2H2 Transcription Factor Family AT3G01460 32.836 5.15e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr3g3332 SET 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3332 K24406 - gmx:100785817 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3332 3 47261002 47265163 Mtr3g3332 3 47261002 47265163 ECH