Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3331 ATGGCTACCGAACAACTCTCATCCCGTCAGCTCTCTCAAAAAGAAGCTGACATCCAGATGATGTTGGCTGCTGATGTCCACCTCGGTACCAAGAACTGTGACTTCCAAATGGAACGTTATTGCTTCAAACGCCGCAACGATGGTATTTATATCATTAATCTTGGAAAAACTTGGGAGAAACTTCAACTAGCTGCCAGGGTCATCGTTGCAATCGAGAACCCCCAGGACATTATTGTTCAATCTGCAAGGCCTTATGGACAGAGAGCCGTTCTTAAGTTTGCTCAGTACACTGGAGCTAATGCTATTGCTGGAAGACACACTCCTGGAACCTTTACTAATCAAATGCAAGTTTCCTTCAGTGAGCCTCGTCTTCTCATCCTCACTGATCCTAGAACTGACCACCAGCCAATCAAGGAGGCTGCTCTTGGAAATATTCCAACTATTGCTTTCTGTGACACTGATTCTCCTATGAGGTATGTTGACATTGGAATTCCCGCTAACAACAAGGGGAAGCATAGCATCGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCTGGTCTTAAGTGGGATGTGATGGTTGATCTCTTCTTCTATAGAGAACCTGAAGAGGCCAAGGAGCAAGAGGAGGATGAAGTTCCTGCTCTAGATTATGCCATTGCTGACTTCAATGCTGGTGTTCCATCTGATGGTCAATGGCCTGCTGCAATTGATCAGCCATGGACTGATGCAGCACCACAGCCCATTCCAGCAGCTCCTGGTGTCAACTGGGCAGCTCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCTGTACCACCACCACAACAAATTCCCACTCCTGGAGTCGAATCTGTGACAGCAACTGGCTGGGATTAA 900 0.4756 MATEQLSSRQLSQKEADIQMMLAADVHLGTKNCDFQMERYCFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQVSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVPALDYAIADFNAGVPSDGQWPAAIDQPWTDAAPQPIPAAPGVNWAAPEAVAGDWGEAVPPPQQIPTPGVESVTATGWD* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3331 299 Gene3D - 17 222 - -
Mtr3g3331 299 MobiDBLite consensus disorder prediction 270 299 - -
Mtr3g3331 299 TIGRFAM uS2_euk_arch: ribosomal protein uS2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Mtr3g3331 299 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 Hamap 40S ribosomal protein SA [rps-0]. 7 278 IPR027498 GO:0003735|GO:0006412|GO:0015935
Mtr3g3331 299 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 Pfam Ribosomal protein S2 121 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 Pfam Ribosomal protein S2 21 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g3331 299 PANTHER 40S RIBOSOMAL PROTEIN SA 10 289 - -
Mtr3g3331 299 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Mtr3g3331 299 PANTHER 40S RIBOSOMAL PROTEIN SA 10 289 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3331 Mtr-Chr3 47244963 47247417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3331 7 275 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.627 7.42e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3331 K02998 - gmx:548014 530.791