Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3328 ATGTTGATGATCTCTGATGAAGGAGATAATGATGTGTTCTTTGACTCATTGGAATGTTTGTCACCTTCTAAAGAAGACTCTCTTTTGACTAAACAAGACCTTAGGTATGAGTTTTGGCTTAATGAGCCTGTTAGTGTGAAGGTAAGAAAAGAAAGGTTTCTACAAGAGATGGGTTTGGTTGATGCTTCTTCTCAAAACGAAATAGTTTGTTGTGAGGAGAGGATCATGGATTGTAGTGTAACAGTATCAAATGGTTGTATTTTGTCTGATGCTGAACATGTTTATGAGAAGTTGGTTGATCCCAAAGATGATGATGATGATGATGATGATAAAGAGCTATCATGTTCCAGTCAAGATCTGAGACATAGAGAAGCTGAGACATTAGAAGAATCTAATGTTATTGATAATGGTAAAAAGAAGAAGAAAAAGTGGTGGAACAAAGTTCTGAACAGAGGGAAAGTTGGATCAAAATCTGGTAATGTGGGTACGAGGAAAGCTCTTCAAATCAATGTAAGGCACAATAAGAAAAGTTGGAATCAGTTTAGTGCTGTGTATACTGGACAAGAGATCAGAGCACACAAAGGTCTAATTTGGACTATGAAATTTAGTCCTAATGGTCAGTATCTAGCAACTGGAGGTGAAGATGGTGTTGTTCGTATATGGTGTGTTTCGTCGTTGAAGGCTTCAAGTATTTGTTTTGCTAAAGAAGACCGTGACATTAGCAAATTGAAACATGACATGTCTTTTTCTCCGAAGAAATGCTCGAGCAAAACCCCAGCTGTTCTTCCAAGGAAGATTCTCAAAATTGAGGAATCCCCGCTGCAAGAACTATATGGTCATTCTAGTGATGTGATGGACTTGGCTTGGTCTGATTCTGATATGCTTCTTTCCTCGTCTATGGATAAAACAGTTCGCATGTGGAAAATTGGTTGTAATCAAAGTTTAAAAGTTTTCCATCACAATGATTATGTGACATGCATTCAATTCAACCCAGTTGATGAAAATCATTTCATCAGTGGTTCCATAGATGGTAAAGTCCGAATATGGGGAGTACATGAAGAGCGAGTTGTTGACTGGGCAGACGTACGAGATATCATAAGTGCTATAAGTTATCAGCCAGATGGGAAGGGGTTTGTAGTTGGTTCCCTTTCTGGTACTTGCCGCTTTTATGTTGCTTCAGGTAAACAATTCCAGCTTGAGGCGAAGATTCGTGTCAATGAAAAAAAGAGATCATCTAGCAACAAGATTACTGGCATTCAGTTTTCCCAGAAAAACCATCGGAGAGTTATGATCACATCACAAGATTCCAAAGTTAGAATATTGGAAGGCCATGAACTTGTTCAGACATATAAAGGCCTTTCAATGTCAGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGAAAACACATAATTTCAGTCGGAGAGGACTCTCGTGTGTATATTTGGAACTTCAATGACTCCGAAGGTCATTTTTCCAAACAGAGAAAAACTGAGAGTTCTTGTGAGTACTTTCGCTCCAAGGGGGTTACTGTTGCAATACCTTGGTCAGGCATGACTGCAGAAAGAAGCTGCTCTCTCAGCGATTTTGCCAACTATTCTTCCAAAACTCAACGACAATGCGTTAGAGAGTCTGAACGTTTTTCTTTTGGTAGTTGGTTCTCCATTGATGGTTCATGCCGAGGTTCTATGACATGGCCCGAAGAGAAACTTCCCAGTTGGGATTCACCTCTTTCAGAAGTTGAATCTGAGGATGAAGAGCTATGTCTTAAGAATCTATGCCATGACAATTGTGTGCCAGAAACATGGGGACTATCAGTTGTTGCAGCAGGTCTTGATGGAACGATCAAGACATTTCACAACTTTGGATTTCCTGCGAGGCTTTAA 1887 0.3964 MLMISDEGDNDVFFDSLECLSPSKEDSLLTKQDLRYEFWLNEPVSVKVRKERFLQEMGLVDASSQNEIVCCEERIMDCSVTVSNGCILSDAEHVYEKLVDPKDDDDDDDDKELSCSSQDLRHREAETLEESNVIDNGKKKKKKWWNKVLNRGKVGSKSGNVGTRKALQINVRHNKKSWNQFSAVYTGQEIRAHKGLIWTMKFSPNGQYLATGGEDGVVRIWCVSSLKASSICFAKEDRDISKLKHDMSFSPKKCSSKTPAVLPRKILKIEESPLQELYGHSSDVMDLAWSDSDMLLSSSMDKTVRMWKIGCNQSLKVFHHNDYVTCIQFNPVDENHFISGSIDGKVRIWGVHEERVVDWADVRDIISAISYQPDGKGFVVGSLSGTCRFYVASGKQFQLEAKIRVNEKKRSSSNKITGIQFSQKNHRRVMITSQDSKVRILEGHELVQTYKGLSMSGSQMSGSFTSSGKHIISVGEDSRVYIWNFNDSEGHFSKQRKTESSCEYFRSKGVTVAIPWSGMTAERSCSLSDFANYSSKTQRQCVRESERFSFGSWFSIDGSCRGSMTWPEEKLPSWDSPLSEVESEDEELCLKNLCHDNCVPETWGLSVVAAGLDGTIKTFHNFGFPARL* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3328 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 317 IPR001680 GO:0005515
Mtr3g3328 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 359 IPR001680 GO:0005515
Mtr3g3328 628 SUPERFAMILY WD40 repeat-like 188 487 IPR036322 GO:0005515
Mtr3g3328 628 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 231 IPR001680 GO:0005515
Mtr3g3328 628 Pfam WD domain, G-beta repeat 189 221 IPR001680 GO:0005515
Mtr3g3328 628 Pfam WD domain, G-beta repeat 314 349 IPR001680 GO:0005515
Mtr3g3328 628 Pfam WD domain, G-beta repeat 272 308 IPR001680 GO:0005515
Mtr3g3328 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
Mtr3g3328 628 SMART WD40_4 311 350 IPR001680 GO:0005515
Mtr3g3328 628 SMART WD40_4 183 222 IPR001680 GO:0005515
Mtr3g3328 628 SMART WD40_4 443 484 IPR001680 GO:0005515
Mtr3g3328 628 SMART WD40_4 352 391 IPR001680 GO:0005515
Mtr3g3328 628 SMART WD40_4 270 308 IPR001680 GO:0005515
Mtr3g3328 628 SMART WD40_4 396 442 IPR001680 GO:0005515
Mtr3g3328 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 349 - -
Mtr3g3328 628 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 221 - -
Mtr3g3328 628 PANTHER WD REPEAT DOMAIN 44 5 628 IPR040324 -
Mtr3g3328 628 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Mtr3g3328 628 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Mtr3g3328 628 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
Mtr3g3328 628 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 5 628 - -
Mtr3g3328 628 Gene3D - 176 516 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3328 Mtr-Chr3 47221212 47227096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3328 274 481 U-box Gene Family AT2G33340 26.457 3.84e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3328 K20241 - gmx:100780979 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3328 3 47221212 47227096 Mtr3g3328 3 47221212 47227096 ECH
Mtr8g3265 8 43112189 43117191 Mtr3g3328 3 47221212 47227096 PCT