Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3327 ATGGTTAGAGAAAGAGTTGTTGATCTATGCATCACTGTTCCCACCTTCTTCAAATGCCCAATCTCACTCGACGTTATGAAATCCCCTGTTAGTCTCTGCACCGGTGTCACCTACGACCGTTCCAGCATCCAACGCTGGTTAGATGACGGTAACAACACGTGTCCCGCCACCATGCAAATACTTCCCACCAAAGATTTTGTACCTAACCGTACTCTACATAGTCTCATCCAGATCTGGACCGACTCTGTTCATCACCGGGTCGAACCGGTCGTTTCACCTTCAGTTCTTTCCAATCAACAACTCCTTCAAACCATCACCGACTTAGCCTCTTCCGGTTTAAACCGAACTTTAAACAGGTTCGGTTTAATCATGAAAGTCATTCATTTCGCTCAAGATTCCGATCAGAACAGAACGTTTCTCGCGAAATTAGACGGTTTTATTCCGTTAATGGTTAGTTTTCTTGATAATGTTGAGAATGTTGACAAAAGCATTGAATTTCTTGAACAGACTTTAACGGTGTTAGGTTTGATTCTGGAAAAAATTAAAGTTCGTGAAGGATTGAAGAACCTTGTGTTAAAAGGAAAGAACAAAAAATGCTTGGATTCAATGGTTCTCGTTTTACAAAAAGGAAGCAACAATTCAAGAATCGCAACCGCCAGGGTTTTGAAATTCATCGCTATAGACGCTGAATCAGAGCTCCTAATAGCTGAGAACGAAGCTTTGTTAACGGAATTGCTGAAATTATCTTCGCCGGAGAATGATTCGAAGCTGATTGAAAATTGCTTATCGTGCTTAATAGCAATCTCAAAACCGAAACGGAACAAACAGAAACTGGTGAAAATTGGAGTAATGAAGATTTTGTCAAAGTTACTTAAAGAGTCTAATACGAGCGTGACGGTGGTGGAGAAGGCGTTGAAGCTGGTTGAAACAGCGTCATCAACGAGTGAAGGGAGAAGAGAGATGTGTGAAGACGCGGCGTTTGTGGCGGCGATACTGAATAAGATTCGGAATGTATCGAACGTTGCGACGGAGCACGCAGTAACGACGCTGTGGAGTGTTTGTTATCTGTTTCGCGATCAAAAAGCACAAGAAGCGGTTACGATGGCAAATGGATTAACGAAGATATTGTTGCTAATACAGAGTAATTGTTCTCCACAAGTTCGCCAAATGTGTACGGATTTGCTTAAGATTTTTCGGGTTAATTCTAAATCGTGTCTTTCTTCTTATGATACCAAAACTTCACATATTATGCCTTTTTAA 1260 0.4135 MVRERVVDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILPTKDFVPNRTLHSLIQIWTDSVHHRVEPVVSPSVLSNQQLLQTITDLASSGLNRTLNRFGLIMKVIHFAQDSDQNRTFLAKLDGFIPLMVSFLDNVENVDKSIEFLEQTLTVLGLILEKIKVREGLKNLVLKGKNKKCLDSMVLVLQKGSNNSRIATARVLKFIAIDAESELLIAENEALLTELLKLSSPENDSKLIENCLSCLIAISKPKRNKQKLVKIGVMKILSKLLKESNTSVTVVEKALKLVETASSTSEGRREMCEDAAFVAAILNKIRNVSNVATEHAVTTLWSVCYLFRDQKAQEAVTMANGLTKILLLIQSNCSPQVRQMCTDLLKIFRVNSKSCLSSYDTKTSHIMPF* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3327 419 CDD RING-Ubox_PUB 17 59 IPR045210 -
Mtr3g3327 419 Gene3D - 296 398 IPR011989 -
Mtr3g3327 419 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 8 419 - -
Mtr3g3327 419 Gene3D - 96 295 IPR011989 -
Mtr3g3327 419 SUPERFAMILY ARM repeat 101 401 IPR016024 -
Mtr3g3327 419 SUPERFAMILY RING/U-box 11 82 - -
Mtr3g3327 419 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Mtr3g3327 419 Pfam U-box domain 13 81 IPR003613 GO:0004842|GO:0016567
Mtr3g3327 419 PANTHER WDSAM1 PROTEIN 8 419 IPR045185 GO:0061630
Mtr3g3327 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 86 IPR013083 -
Mtr3g3327 419 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3327 Mtr-Chr3 47202724 47204488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3327 8 419 U-box Gene Family AT5G64660 50.939 1.17e-136 396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3327 3 47202724 47204488 Mtr3g3327 3 47202724 47204488 ECH
Mtr3g3327 3 47202724 47204488 Mtr8g3264 8 43096958 43098435 ECH
Mtr8g3264 8 43096958 43098435 Mtr3g3327 3 47202724 47204488 PCT