Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3319 ATGTATGCTACTACTTCCTTTGTTTCACCACTCCTCCATGAACTTGTTGAGAATTTCCACTCAAGAAGGTTACTCCTTCACTCATCCAATTCAGCCAACCCTCCAATTTCCACAAGCATCCATGATTCAACTAAAGAATCATCATATGCTGGAGATGGTAATTTTGATGCAAATGTTGTTATGGTACTCTCTGTCCTATTATGTGCTCTTATTTGTTCACTTTGTTTGAACTCAATCATAAGGTGTGCATTAAAATGTTCCAATTTAGTTGTGATGAGTGGTGATCGCTCCGCTAACAACATTCCAGTTCGAGCGGCAAACACTGGAATCAAGAAGAAAGCTCTCAAGAAATTCACCACAGTTAGTTACTCAGATGAGCTGAAATTGCCGAGTTTGGACTCGGAGTGTGTGATATGTCTGTCGGAGTTCACTAACGGCGATAAAGTGCGCCTTTTGCCAAAGTGTAACCATGGATTTCATGTTCGTTGCATTGACAAATGGCTAAGTTCGCATTCGTCTTGTCCGAAATGTAGACAGTGCCTTATTGAAACTTGTAACAAAATTGTTGGGTCACAAGGTAGTTCATCCCAACCACAACCTATGTTGTTTCCGGTGCCCGAAACAATTGTAACTATAGCACCACTGGAACCTGAAGGTTTGGTGCGTAATTATAGGGAGGTTAGCTAA 687 0.4119 MYATTSFVSPLLHELVENFHSRRLLLHSSNSANPPISTSIHDSTKESSYAGDGNFDANVVMVLSVLLCALICSLCLNSIIRCALKCSNLVVMSGDRSANNIPVRAANTGIKKKALKKFTTVSYSDELKLPSLDSECVICLSEFTNGDKVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCNKIVGSQGSSSQPQPMLFPVPETIVTIAPLEPEGLVRNYREVS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3319 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 182 IPR013083 -
Mtr3g3319 228 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Mtr3g3319 228 PANTHER RING-H2 FINGER PROTEIN ATL78 3 226 IPR044602 GO:0016567|GO:0016740
Mtr3g3319 228 SMART ring_2 136 177 IPR001841 -
Mtr3g3319 228 SUPERFAMILY RING/U-box 114 184 - -
Mtr3g3319 228 CDD RING-H2_PA-TM-RING 135 178 - -
Mtr3g3319 228 Pfam Ring finger domain 135 178 IPR001841 -
Mtr3g3319 228 PANTHER RING-H2 FINGER PROTEIN ATL78 3 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3319 Mtr-Chr3 47127803 47128896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3319 23 182 C3H Transcription Factor Family AT3G10910 46.386 4.26e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3319 K19040 - gmx:100787934 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3319 3 47127803 47128896 Mtr3g3319 3 47127803 47128896 ECH
Mtr8g3256 8 43026196 43027365 Mtr3g3319 3 47127803 47128896 ECH
Mtr8g3251 8 43002313 43003182 Mtr3g3319 3 47127803 47128896 PCT