Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3309 ATGAGACATCTTCTCCAAAAGAATCTATTATTTTTCACTTCATCTTCTTCATCATTTCAACCTCGTTCTCTTCTTCTTCTTCGCTTTCATCTCTGCGAATTCTCATCTTCTCCGGCTCCGTCGTATTCTCACTGGAAGCGTCTCGATGACGAGTCACGAAACGTTAGGGTTTCTGTGTGGTGGGATTTCGAGAACTGCAGCGTGCCGGTCGGCCTTAACGTTTCCAGAGTAGCCCCGTCAATCACTGACGCCGTTAGAGCGAACGGGATTAAAGGTCCTGTTCATATTACTGCTTTCGGTGATGTGATGCAGCTTTCTAAATCTAATCAAGAATCACTTGCTTTCACTGGCATTCATCTCACTCACATTCCCAATGGTGGAAAGAATAGTGCTGATAGATCTCTTCTTATTGATCTTATGTACTGGGTTTCCCAAAATCCTCCACCTGCACATCTCTTTCTGATATCCGGTGATGGGGACTTTGCTGGCATATTGCACCGATTAAGGATGAATAACTACAATATCTTGCTTGCTATTCCTGGAAAGGCTCCTGATGTTCTCCGCAGCGCAGCAACTATAATGTGGCAGTGGACTTCATTGCTCAAAGGAGAAAATCTAACTGGAAAACATTTCAACCACCCTCCCGATGGTCAGTTTGGTTCTTGGTATGGAAATTCTAAAGTGCCACTTGAAAACCCCTTTTCAGCTACTGGGCAGTCAACATCTTCACAAAATGTACAAATCGTGGAAATCAATGAACCTTCCTCAGACTTAAAGTTGGCTGAAGGAGTTCCAAAGTCAGTTATACGGCAGGTTAAAGATATATTGAGTTCACATCCAAATGGTATCTCCGCTATAGATCTTCGTGCAGAGCTGGCCAAACGTGGTGTTATTTTGGGTAGAAGCATGTTTGGATATAGAAGACTTTCCCGCTTTCTATCATCAATACCAGATGTACATCTTCAGAATTTAGGAGACGGTAATTTTTGTGTGTGTTTGATCCCCTCAGAGTCCCCTGAACCCTCTGAGAAAAGCATTGTACCATCGACGACATATGCTGTTAAGAATGAGGAGAAGGACTATACAACAACTCCAAAGCTACACGGTGAAGATAAAGAGTTGGATGGAGACAAACATAGGACTCCCTCAATGTCTTCATCACATGAAAGGATCGTTGAGGATGATTCAAAATCATTCCAATCTTTCCCTTCACAAGAAAAACCTATCGGAGAAGATGTGTCGCATAAATCATGGGGCTATACAACAATTCCAAAGCTACACAGTGAAGATAAAGACACGGGCAAAGACGGACCTCCCTCAATGTCTTCATTGCATGAAAAGACCATTAAGGATGATTCAAAATCATTCCTATCTACACCTTCACAAGGAAAACCTATTGAGGAAGATGTGCCATGTAAATCATCTGGAAGAAGTGAGAAGGTTGAGGATGTGTCTAATGTACAATTGTCGGAGAGTCAACTTTCACCAAAGGACAATGATGGTTCCAAAACTGAGACTGGTTCCTTTAAAGTGAGATCTAAAAAGTTTTCGGAAGATAAAATTGTTAGGTCTGAGGATGCAAATCCAGACGTTCTTGAAAAATATACCGCTTCAAGGGATCCCTCTGCAGGTATTGATAACACAATGGTGGAAAGCAATGATAGAGCAAATTGTGAATTTGGAAAATCTATAGCGAGGAACAAACATGTGAATCAACCTAGAAAGAAGGTTGATGATCACAGCCCATATTCTTCAGCAGCTGAGGACTCTCTGGTTGACAAAAGACCCGATGGTCGTGCTGAAACTTACAGTGAAAGATCAACTTTGTTTAGCTGGATTAAAAGCTGGTGGCCATTTTCGAAAAGCAACGTGAAGGCTGATAATTTGACTGCTCATCAGAACAAGGTGGACAGTAATTTTGAGGATCCTAGGTTAACTGAATTGGACCAGACTACTGGTAATGTTGAAGAGCGCAAGCCATTAGAATCACATCAAGATGTCAGTCATTCTGGAAAGCCTGAAGATTCCAAGTTATCTGAACTGGACCAGACTGCTAGTGATCTTGAAGAGGCCAAGCCATTGGAACCACATCATCAGGATATCAGTCGTTCTGGAAAACCCAAGGATTCCAAGTTTTCTGAACTAGACCAGACTGCTAGTAATCTTGAAGAGGCCAAGCCTTTAGAACCACACCAGGATGCTGGTCATTCTGGAAAGCCTGAGTTATTTTCTCTGGATTCCTTTTGGAATGACATGGAATCTTTTGTTTTCACCCCCAAAGGATCACTTCTTATTTCCCAGTCTAAAAGCAGGGAGGATTTGGCTCATAAATTACAAAAGCATGGACCCATGGTTCTAAAATCTCTTTCTGAAAATTATATCTTTCAATTGGTGGAATTGTTAGTAGCAGAAAAAAGATGGTTGGAGGAAAGCACCTCACAAGCATTTCCTTTTCGGCTAACTCATTCAGTTCAGAAGAGTGCACTGTCTGGCCACACTAATGGTGCAAATGGTTTGAGATCTCTCTTTCTAAGTAAAACATCGCAGCCCAACTTGCAAAAGTCATTTGAACATGACGGGGAGAAACCCACTCAGAGTATTCAGCGAACGGGAGTTTCCAGACCTGCCACTGAAATAAAATATACTGAGAAGTCTAGAAGTGATATATTACAAGATTGTCAGAGACTGGTAACTGATATATTGAAGGAAAACCCAGAGGGTTATAATTTAGCTTCTTTTCGAAAGCAATTTGCTTATAGATATGGCTATACCCTTGATGTCAAGAAGCTTGGTTATCAGAAGATATCATACTTGATACAGATAATGCATGGGGTTAAATTAGAATCCTATTGTTCCAAAAAAAGTAAAAATTCAGAATCCACTTATATGTATCCTGCTCCTGCTGTTTGTGCTTCTGACTCAGAAACATCTATCTTCAAAACTCATGCAGCCAATGCTAATCATGAATTCAACTCAGATGATGAATTATCTGATACAGCCACAAAAGAGGATAACATGGAATCACCTTGGGAGGAATTAGGTCCTGTTTCTGCTAAAAAACCAAGTCAGAATGATCTGGAATCAAATTCAACTCTGAAAGCCATTGAAATGGATACACCAAAGCATCCTGATTATGAACCCATTGTCTCAGATGATGATTCTTCTGAATCCGACGAGGATAGTTCTTGTTTAACTCAACCAGAAGAGCTAGGAAAGCCAAAATATGATGAACAAGACAGCTCTTTAATTCAAACTCTGGATATCTTTCATAGCAGCAAGGAAGGAGCAAATAGTTGTGATGATCTGCTTAACATGTTAGATTCATCCTTAAATTCAAAACAGGGTTTCGTTTCCAAAAATACTTCAGGGAATCACAGAGAAAAGCAAAGATCTCAAAGGTATTGTTTTGTTGATGACCCAGGCTTACCTGACAACGACAAGTGTATTGGTGGGCTACCAGGTAACTCAAAGAAAGAGGATAGTGCGAACATGCAAAACTGA 3501 0.4076 MRHLLQKNLLFFTSSSSSFQPRSLLLLRFHLCEFSSSPAPSYSHWKRLDDESRNVRVSVWWDFENCSVPVGLNVSRVAPSITDAVRANGIKGPVHITAFGDVMQLSKSNQESLAFTGIHLTHIPNGGKNSADRSLLIDLMYWVSQNPPPAHLFLISGDGDFAGILHRLRMNNYNILLAIPGKAPDVLRSAATIMWQWTSLLKGENLTGKHFNHPPDGQFGSWYGNSKVPLENPFSATGQSTSSQNVQIVEINEPSSDLKLAEGVPKSVIRQVKDILSSHPNGISAIDLRAELAKRGVILGRSMFGYRRLSRFLSSIPDVHLQNLGDGNFCVCLIPSESPEPSEKSIVPSTTYAVKNEEKDYTTTPKLHGEDKELDGDKHRTPSMSSSHERIVEDDSKSFQSFPSQEKPIGEDVSHKSWGYTTIPKLHSEDKDTGKDGPPSMSSLHEKTIKDDSKSFLSTPSQGKPIEEDVPCKSSGRSEKVEDVSNVQLSESQLSPKDNDGSKTETGSFKVRSKKFSEDKIVRSEDANPDVLEKYTASRDPSAGIDNTMVESNDRANCEFGKSIARNKHVNQPRKKVDDHSPYSSAAEDSLVDKRPDGRAETYSERSTLFSWIKSWWPFSKSNVKADNLTAHQNKVDSNFEDPRLTELDQTTGNVEERKPLESHQDVSHSGKPEDSKLSELDQTASDLEEAKPLEPHHQDISRSGKPKDSKFSELDQTASNLEEAKPLEPHQDAGHSGKPELFSLDSFWNDMESFVFTPKGSLLISQSKSREDLAHKLQKHGPMVLKSLSENYIFQLVELLVAEKRWLEESTSQAFPFRLTHSVQKSALSGHTNGANGLRSLFLSKTSQPNLQKSFEHDGEKPTQSIQRTGVSRPATEIKYTEKSRSDILQDCQRLVTDILKENPEGYNLASFRKQFAYRYGYTLDVKKLGYQKISYLIQIMHGVKLESYCSKKSKNSESTYMYPAPAVCASDSETSIFKTHAANANHEFNSDDELSDTATKEDNMESPWEELGPVSAKKPSQNDLESNSTLKAIEMDTPKHPDYEPIVSDDDSSESDEDSSCLTQPEELGKPKYDEQDSSLIQTLDIFHSSKEGANSCDDLLNMLDSSLNSKQGFVSKNTSGNHREKQRSQRYCFVDDPGLPDNDKCIGGLPGNSKKEDSANMQN* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 356 605 - -
Mtr3g3309 1166 Gene3D - 884 954 IPR041966 -
Mtr3g3309 1166 Gene3D - 49 199 - -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 359 396 - -
Mtr3g3309 1166 CDD LOTUS 265 333 - -
Mtr3g3309 1166 CDD PIN_limkain_b1_N_like 56 180 - -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 1116 1166 - -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 651 713 - -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 989 1009 - -
Mtr3g3309 1166 ProSiteProfiles OST-type HTH domain profile. 889 967 IPR025605 -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 989 1078 - -
Mtr3g3309 1166 PANTHER LIMKAIN B LKAP 10 1113 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 481 502 - -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 503 533 - -
Mtr3g3309 1166 Pfam NYN domain 56 191 IPR021139 GO:0004540
Mtr3g3309 1166 ProSiteProfiles OST-type HTH domain profile. 264 335 IPR025605 -
Mtr3g3309 1166 Gene3D - 265 334 IPR041966 -
Mtr3g3309 1166 PANTHER EMB|CAB71880.1 10 1113 - -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 1021 1035 - -
Mtr3g3309 1166 Pfam OST-HTH/LOTUS domain 890 942 IPR025605 -
Mtr3g3309 1166 Pfam OST-HTH/LOTUS domain 267 328 IPR025605 -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 633 717 - -
Mtr3g3309 1166 CDD LOTUS 890 945 - -
Mtr3g3309 1166 MobiDBLite consensus disorder prediction 853 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3309 Mtr-Chr3 47053761 47059033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3309 56 203 C2H2 Transcription Factor Family AT5G61190 44.595 6.72e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3309 - - mtr:MTR_3g095410 2326.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3309 3 47053761 47059033 Mtr3g3309 3 47053761 47059033 ECH