Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3308 ATGGATTTGGACGATTTCCGATCTATATTACACACGGCGGGCGTTGACGTGTGGATGTTCATCGACACGGCGATCTCCGTCGCTGCGCAGGATAACGCCGGTGAGCTAAAGAGGAGAAGAGACGGAATCGTGGAGCGTCTTTACGCGGCTTCGACGGAGGGTATTCCGATGTGTCAGAATTGCGATGGAGGTCAACGTCTCGTGACAAACGATAACCAAATCAAGAAAGAGAACAGTCCTAGCCTGAGTCCGGAACGACAACCGCGCCGCGGCGGAGCTTCTTCTCCTCCGACGCCGCAGTCTGAAGGAAACGAAGACGGTGAAGATGAGGAGATAGATCCGTACGGTGGTTTGTTTGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCTTCTAGAAGATCCTCATCAGTCCGAAGACACTTTGATGGAGTTGCTACAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAAACTGACATCGGGAGGAACGTGAATCAGTTGCGAAAACATCCATCTAGCGATGTTCGCCGATTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATAGTTGATGACTGGGTGAAGCAGAATCCACAAAGAGGGAAAAGCACTCTCATGGCTGATGGAGACTCTCCTTTGCAGAAAACCACCCCAAATGGGCATAATCATCAGATTCCTGATTTTGCGTACTCTCCAAATCCACACAATGGGAGCTCTGGTTCCGACCGTAACACCTCCGAAGCTGAACCAAAACCAAAACCTAAATCAGTACCTCGCAAAGACCCACCTCCAAAACCAAGGCCATCACCCCCAGTTACCGCCCCTACCTCTGCTCCTCAAAATAGACAGAGAGAACAGAAAGAGAGCAATTTTGATGCAGAGAGGCTGGCTGCTGCAAGAAAACGGCTTCAAGCGAACTACAAAGAGGCTGATAATGCAAAAAAGCAAAGAACAATTCAGGTGATGGACATACATGAGTTACCTAAGTCAAAAGCAAAGAGTGGTTACTTTGCAAAGCACAAAGGTGGTGGCAGTTCTCAAGGAAGGCAGCACTGGTGA 1074 0.4786 MDLDDFRSILHTAGVDVWMFIDTAISVAAQDNAGELKRRRDGIVERLYAASTEGIPMCQNCDGGQRLVTNDNQIKKENSPSLSPERQPRRGGASSPPTPQSEGNEDGEDEEIDPYGGLFDDEQKKILEIKELLEDPHQSEDTLMELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSDVRRLVKLLVKKWKEIVDDWVKQNPQRGKSTLMADGDSPLQKTTPNGHNHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKPKSVPRKDPPPKPRPSPPVTAPTSAPQNRQREQKESNFDAERLAAARKRLQANYKEADNAKKQRTIQVMDIHELPKSKAKSGYFAKHKGGGSSQGRQHW* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3308 357 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 357 - -
Mtr3g3308 357 SMART TFS2_5 126 197 IPR003617 GO:0005634
Mtr3g3308 357 MobiDBLite consensus disorder prediction 205 250 - -
Mtr3g3308 357 MobiDBLite consensus disorder prediction 290 338 - -
Mtr3g3308 357 MobiDBLite consensus disorder prediction 251 267 - -
Mtr3g3308 357 ProSiteProfiles TFIIS N-terminal domain profile. 121 198 IPR017923 -
Mtr3g3308 357 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 357 IPR044790 -
Mtr3g3308 357 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 207 IPR035441 -
Mtr3g3308 357 Coils Coil 298 321 - -
Mtr3g3308 357 Pfam TFIIS helical bundle-like domain 146 195 IPR017923 -
Mtr3g3308 357 MobiDBLite consensus disorder prediction 205 357 - -
Mtr3g3308 357 MobiDBLite consensus disorder prediction 75 117 - -
Mtr3g3308 357 CDD TFIIS_I 123 196 - -
Mtr3g3308 357 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 209 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3308 Mtr-Chr3 47038573 47041397 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mtr3g3308 Med26 5.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3308 - - aip:107622503 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3308 3 47038573 47041397 Mtr3g3308 3 47038573 47041397 ECH